Disturbance of serum lipoprotein profiles in peripheral blood of patients with chronic HCV infection may play a critical role in cell entry of HCV and affect the efficacy of IFN-based antiviral therapy (
22). In addition, the importance of lipid factors on treatment outcome of antiviral therapy may continue in the era of direct acting antivirals (DAA). DAA should be used in combination with IFN plus RBV because monotherapy with a newly developed DAA (protease inhibitor; boceprevir or telaprevir) causes rapid emergence of resistant HCV (
23,
24). Therefore, factors affecting IFN plus RBV combination therapy such as lipid profiles may also influence the efficacy of triple therapy (DAA, IFN, and RBV). In the present study, we fractionated serum lipoprotein particles into chylromicrons, VLDL, LDL, and HDL using HPCL. This HPLC-based method required a small sample size and a relatively short time (about 25 minutes) for fractionation. Therefore, this HPLC-based method may be superior to other methods for detailed examination of lipoproteins in many patients. Furthermore, this HPLC system offers precise information on TG concentrations along with cholesterol levels in each fraction simultaneously (
25). In a study on HCV G1, distortion of lipoprotein metabolism was more profound in patients who were non-favorable responders, and decreases of LDL-C, HDL-C, and TG were reported using conventional measurement technologies (
26). However, after the discovery of rs8099917 and rs12979860 near the human IL28B gene as a strong host factor affecting the response to peg-IFN plus RBV therapy (
27,
28), the significance of lipid profiles on predicting SVR was thought to be doubtful because the power of the IL28B genotype for predicting the efficacy of peg-IFN plus RBV therapy was so strong (
29,
30). In the present study, we found that the C/T ratio in fasting serum VLDL was independently associated with SVR along with the IL28B genotype in patients with chronic HCV G1b who were treated with peg-IFNα-2b plus RBV. However, significant differences were not observed in other lipids including LDL-C. Using a similar method, Mawatari et al. showed that the cholesterol levels in the 44.5-nm and 36.8-nm subfraction of VLDL, in addition to the 25.5-nm subfraction of LDL, were significantly higher in patients with SVR than in non-SVR who were infected with HCV G1b and treated with peg-IFN plus RBV (
31). However, they examined a relatively small number of patients without information on IL28B genotype. In our study, we did not subdivide the VLDL and/or LDL fraction because the VLDL and/or LDL fraction was not clearly separated into subfractions by the HPLC method as shown in
Figure 1. It is known that there are at least two subtypes of VLDL: large, TG-rich VLDL1 and small VLDL2 (
32). Therefore, increases of the C/T ratio in VLDL may indicate a decrease in VLDL1 and/or an increase in VLDL2. Based on the report of Mawatari et al., increases in cholesterol in the 44.5-nm and 36.8-nm subfractions of VLDL were associated with a favorable response to combination therapy (
31). This finding may indicate an increase in the specific subtype of VLDL sized 36.8-44.5 nm. As shown in their report, TG levels of the 44.5-nm subfraction were concomitantly increased in patients with SVR. Because of the relative increase of cholesterol compared with TG, the C/T ratio of this subfraction was higher in patients with SVR than in patients with non-SVR. Thus, our finding of increased C/T ratio in VLDL does not conflict with the results of previous reports, and we assume that the increase of C/T ratio in VLDL fraction in patients with SVR was not merely due to increases or decreases in specific subtypes of VLDL but also to relative increases of cholesterol components in the VLDL particle having a similar diameter. Our finding that the difference of biochemical nature of VLDL may affect the response to peg-IFN plus RBV therapy is an independent phenomenon apart from the IL28B genotype. This issue has not been mentioned till now and we believe that our literature is the first report to refer to the significance of the biochemical nature of VLDL. The reason why the increase of C/T ratio in the VLDL fraction could be related to a favorable response to peg-IFN plus RBV is not fully understood. We assume that one of the reasons may be modulation of the immune function of dendritic cells by modified lipoproteins (
33). In the present study, we also examined factors associated with NVR. However, no lipid factor was elucidated as an independent factor. In terms of predicting NVR, the IL28B genotype is an extraordinary strong factor, and aa substitution at 70 in the core region of HCV G1b is also a strong predictor. These factors may also affect serum lipid profiles, as described in our previous study (
21). Therefore, lipid factors were not independent but thought to be confounding factors of the IL28B genotype and/or aa70 substitution for predicting NVR. In conclusion, the nature of VLDL expressed as C/T ratio is an independent factor in predicting a favorable response to peg-IFN plus RBV combination therapy in patients with chronic HCV genotype 1b infection.