1. Background
| Population | rs738409 (Minor alleles, Frequency) | rs2281135 (Minor alleles, Frequency) | LD of rs738409-rs2281135 (D’, r2) |
|---|---|---|---|
| CHB + JPT | G, 0.223 | A, 0.388 | 0.976, 0.953 |
a JPT, Japanese in Tokyo, Japan; and CHB, Han Chinese in Beijing, China. These reference populations were genotyped in the HapMap study (http://hapmap.ncbi.nlm.nih.gov/)
2. Objectives
3. Patients and Methods
3.1. Patients
3.2. Physical and Biochemical Evaluation
3.3. DNA Extraction and Genotyping
3.4. Statistical Analysis
4. Results
4.1. General Characteristics
| Parameters | CHB (n = 141) | LC (n = 203) | P Value |
|---|---|---|---|
| Male/Female | 96/45 | 144/59 | 0.571 b |
| Age, y | 43.65 ± 14.31 | 50.05 ± 11.56 | < 0.001 c |
| Diabetes, yes/no | 10/131 | 25/178 | 0.115 b |
| Alcohol > 30 g/d, yes/no | 18/123 | 30/173 | 0.596 b |
| ALT, IU/L | 164.5 (6-1940) | 41 (9-1797) | < 0.001 c |
| AST, IU/L | 106.5 (14-1657) | 56 (16-1638) | < 0.001c |
| GGT, IU/L | 97 (6-1957) | 37 (1.4-391) | < 0.001c |
| T-Bil, μmol/L | 27 (0-853) | 30.9 (2.2-653) | 0.252 c |
| ALB, g/L | 36.6 (0-527.7) | 31 (0-305.9) | < 0.001 c |
| HBV-DNA, copies/ml | 9.76E4 (0-2.73E8) | 1.67E3 (0-1.16E8) | < 0.001 c |
a Abbreviations: ALT, serum alanine aminotransferase; AST, aspartate aminotransferase; GGT, gamma-glutamyl transferase; T-Bil, serum total bilirubin; ALB, serum albumin; CHB, chronic hepatitis B group; and LC, liver cirrhosis group. Continuous variables are reported as mean ± SD or medians (range) and categorical variables as frequencies.
b Obtained P value by the Pearson's chi-square test.
c Obtained P value by the Mann-Whitney U test.
| Polymorphisms | Alleles | CHB (n = 141) | LC (n = 203) | LC vs. CHB | |
|---|---|---|---|---|---|
| P value | P value/OR (95%CI) b,c | ||||
| rs738409 | CC | 62 (0.44) | 79 (0.39) | Ref | |
| CG | 55 (0.39) | 91 (0.45) | 0.278 | 0.119/1.532 (0.897-2.617) | |
| GG | 24 (0.17) | 33 (0.16) | 0.81 | 0.831/0.927 (0.46-1.868) | |
| GG + GCd | 79 (0.56) | 124 (0.61) | 0.348 | 0.258/1.326 (0.813-2.164) | |
| C | 179 (0.63) | 249 (0.61) | Ref | ||
| G | 103 (0.37) | 157 (0.39) | 0.568 | 0.718/1.067 (0.75-1.518) | |
| rs2281135 | GG | 61 (0.43) | 74 (0.36) | Ref | |
| AG | 55 (0.39) | 94 (0.46) | 0.157 | 0.066/1.458 (0.968-2.839) | |
| AA | 25 (0.17) | 35 (0.17) | 0.648 | 0.895/1.048 (0.524-2.093) | |
| AA + AG d | 80 (0.57) | 129 (0.64) | 0.203 | 0.139/1.450 (0.886-2.374) | |
| G | 177 (0.62) | 242 (0.60) | Ref | ||
| A | 105 (0.37) | 164 (0.40) | 0.403 | 0.483/1.134 (0.798-1.61) | |
a Data were presented as No. (%).
b P value or OR after adjustment. The statistical analysis was performed using the Pearson's Chi square test, and using binary logistic analysis to adjust age, ALT, AST, HBV DNA, ALB, and GGT.
c Abbreviations: CI, confidence interval; CHB, chronic hepatitis B group; LC, liver cirrhosis group; and OR, odds ratio.
d At-risk genotype.
| Alleles | CHB, n = 45 | LC, n = 59 | LC vs. CHB | ||
|---|---|---|---|---|---|
| P value | P value /OR (95%CI) b | ||||
| Female | |||||
| rs738409 | CC | 19 (0.42) | 23 (0.39) | Ref | |
| CG | 18 (0.4) | 25 (0.42) | 0.754 | 0.606/0.739 (0.235-2.33) | |
| GG | 8 (0.18) | 11 (0.19) | 0.82 | 0.671/0.727 (0.166-3.179) | |
| GG + GC c | 26 (0.58) | 36 (0.61) | 0.739 | 0.577/0.763 (0.25-2.164) | |
| C | 56 (0.62) | 57 (0.55) | Ref | ||
| G | 34 (0.38) | 47 (0.45) | 0.296 | 0.489/0.778 (0.381-1.586) | |
| rs2281135 | GG | 19 (0.42) | 20 (0.34) | Ref | |
| AG | 18 (0.4) | 26 (0.44) | 0.475 | 0.709/0.801 (0.251-2.560) | |
| AA | 8 (0.18) | 13 (0.22) | 0.43 | 0.982/0.983 (0.229-4.215) | |
| AA + AG c | 26 (0.58) | 39 (0.66) | 0.385 | 0.773/0.852 (0.287-2.53) | |
| G | 56 (0.62) | 66 (0.56) | Ref | ||
| A | 34 (0.38) | 52 (0.44) | 0.361 | 0.798/0.912 (0.449-1.852) | |
| Male | |||||
| Alleles | CHB, n = 96 | LC, n = 144 | LC vs. CHB | ||
| P value | P value /OR (95%CI) b,c | ||||
| rs738409 | CC | 43 (0.45) | 56 (0.39) | Ref | |
| CG | 36 (0.38) | 66 (0.46) | 0.237 | 0.102/1.713 (0.899-3.263) | |
| GG | 17 (0.18) | 22 (0.15) | 0.987 | 0.949/0.922 (0.398-2.132) | |
| GG + GC d | 53 (0.55) | 88 (0.61) | 0.363 | 0.229/1.433 (0.798-2.575) | |
| C | 122 (0.64) | 178 (0.62) | Ref | ||
| G | 70 (0.36) | 110 (0.38) | 0.7 | 0.493/1.150 (0.771-1.714) | |
| rs2281135 | GG | 43 (0.45) | 54 (0.38) | Ref | |
| AG | 36 (0.38) | 68 (0.47) | 0.159 | 0.124/1.656 (0.87-3.15) | |
| AA | 17 (0.18) | 22 (0.15) | 0.937 | 0.833/0.914 (0.394-2.121) | |
| AA + AG d | 53 (0.55) | 90 (0.63) | 0.259 | 0.261/1.401 (0.778-2.521) | |
| G | 122 (0.64) | 176 (0.61) | Ref | ||
| A | 70 (0.36) | 112 (0.39) | 0.591 | 0.529/1.137 (0.763-1.693) | |
a Data were presented as No. (%).
b P value or OR after adjustment. The statistical analysis was performed using Pearson's Chi square test, and using binary logistic analysis to adjust age, ALT, AST, HBV DNA, ALB, and GGT.
c Abbreviations: CI, confidence interval; CHB, chronic hepatitis B group; LC, liver cirrhosis group; and OR, odds ratio.
d At-risk genotype.
4.2. Association of PNPLA3 Haplotypes With Liver Cirrhosis
| PNPLA3 Haplotypes | LC vs. CHB | ||
|---|---|---|---|
| rs2281135 | Frequency | P value | |
| rs738409 | |||
| C | G | 0.606 | 0.3348 |
| G | A | 0.375 | 0.6598 |
| C | A | 0.016 | 0.1214 |
a Abbreviation: CHB, chronic hepatitis B group; and LC, liver cirrhosis group.