1. Background
2. Objectives
3. Materials and Methods
3.1. Bacterial Strains and Culture Conditions
3.2. Cell Culture and Bacterial Challenge of the Human Fetal Osteoblast Cell Line
3.3. WST Assay
3.4. Scanning Electron Microscopy
3.5. Assessment of Matrix Mineralization
3.6. RNA Extraction and cDNA Synthesis
3.7. Real-Time Polymerase Chain Reaction Profiler Array
3.8. Quantitative Real Time Polymerase Chain Reaction
4. Results
| Gene Description | Gene Symbol | Accession No a | Fold Change | |
|---|---|---|---|---|
| Porphyromonas gingivalisb | Prevotella intermediac | |||
| Activin A receptor, type I | ACVR2A | NM-001616 | 3.34 | 6.681 |
| Osteocalcin | OC | NM-199173 | 0.895 | 3.58 |
| BMP binding endothelial regulator | BMPER | NM-133468 | 5.816 | 23.264 |
| Bone morphogenetic protein receptor, type IA | BMPR1A | NM-004329 | 0.551 | 7.674 |
| Bone morphogenetic protein receptor, type IB | BMPR1B | NM-001203 | 40.504 | 3.58 |
| Bone morphogenetic protein receptor, type II | BMPR2 | NM-001204 | 14.32 | 5.816 |
| Collagen, type I, alpha 1 | COL1A1 | NM-000088 | 0.24 | 13.361 |
| Collagen, type I, alpha 2 | COL1A2 | NM-000089 | 0.008 | 6.233 |
| Collagen, type III, alpha 1 | COL3A1 | NM-000090 | 1.919 | 3.58 |
| SMAD family member 1 | Smad1 | NM-005900 | 4.113 | 15.348 |
| SMAD family member 2 | Smad2 | NM-005901 | 0.895 | 3.117 |
| SMAD family member 3 | Smad3 | NM-005902 | 0.004 | 0.678 |
| SMAD family member 4 | Smad4 | NM-005359 | 0.003 | 4.724 |
| SMAD family member 5 | Smad5 | NM-005903 | 0.016 | 0.148 |
| SMAD specific E3 ubiquitin protein ligase 1 | SMURF1 | NM-020429 | 0.678 | 10.126 |
| Signal transducer and activator of transcription 1, 91kDa | STAT1 | NM-007315 | 0.002 | 6.681 |
| Runt-relatedtranscription factor 1 | RUNX1 | NM-001754 | 1.454 | 11.632 |
| Serpin peptidase inhibitor, clade E, member 1 | SERPINE1 | NM-000602 | 0.021 | 10.126 |
| Transforming growth factor, beta-induced, 68kDa | TGFB1 | NM-000660 | 0.042 | 6.233 |
| Transforming growth factor, beta receptor 1 | TGFBR1 | NM-004612 | 3.58 | 1.454 |
| Transforming growth factor, beta receptor 2 | TGFBR2 | NM-003242 | 0.097 | 0.182 |
| Transforming growth factor, beta receptor 3 | TGFBR3 | NM-003243 | 3.117 | 0.514 |
| TGFB-induced factor homeobox 1 | TGIF1 | NM-003244 | 0.097 | 0.633 |
| Latent transforming growth factor beta binding protein 1 | LTBP1 | NM-000627 | 0.678 | 2.713 |
| Latent transforming growth factor beta binding protein 2 | LTBP2 | NM-000428 | 3.117 | 2.908 |
| Latent transforming growth factor beta binding protein 4 | LTBP4 | NM-003573 | 1.028 | 0.418 |
a Fold change value of a gene following P. gingivalis challenge.
b Fold change value of a gene following P. intermedia challenge. Fold change of mRNA level was calculated relative to the expression value in non-challenged cells. Fold-change values less than one indicate a negative or down-regulation
c Accession numbers indicate the sequence used as Super Array analysis.
| Gene Description | Gene Symbol | Accession No a | Fold Change | |
|---|---|---|---|---|
| Porphyromonas gingivalisb | Prevotella intermediac | |||
| Toll-like receptor 3 | TLR3 | NM-003265 | 0.025 | 0.021 |
| Toll-like receptor 4 | TLR4 | NM-138554 | 1.231 | 2.144 |
| Toll-like receptor 5 | TLR5 | NM-003268 | 0.002 | 0.00 |
| Toll-like receptor 6 | TLR6 | NM-006068 | 0.002 | 0.005 |
| Myeloid differentiation primary response gene (88) | MYD88 | NM-002468 | 1.741 | 3.482 |
| Toll interacting protein | TOLLIP | NM-019009 | 3.732 | 1.516 |
| Toll-like receptor adaptor molecule 1 | TICAM1 | NM-182919 | 1.414 | 1.072 |
| Toll-like receptor adaptor molecule 2 | TICAM2 | NM-021649 | 0.095 | 0.354 |
| Interleukin 12A | IL12A | NM-000882 | 0.009 | 0.006 |
| Interleukin 1A | IL1A | NM-000575 | 0.467 | 0.379 |
| Interleukin 1B | IL1B | NM-000576 | 0.536 | 0.536 |
| Interleukin 6 | IL6 | NM-000600 | 0.354 | 0.083 |
| Interleukin 8 | IL8 | NM-000584 | 17.148 | 12.126 |
| Interleukin-1 receptor-associated kinase 1 | IRAK1 | NM-001569 | 0.095 | 0.144 |
| Interleukin-1 receptor-associated kinase 2 | IRAK2 | NM-001570 | 3.031 | 5.657 |
| Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | NFKB1 | NM-003998 | 2 | 1.866 |
| NFKB inhibitor, alpha | NFKBIA | NM-003998 | 0.707 | 0,33 |
| Nuclear factor related to kappaB binding protein | NFRKB | NM-006165 | 6.498 | 21.112 |
| Mitogen-activated protein kinase kinase 3 | MAP2K3 | NM-002756 | 0.203 | 0.095 |
| Mitogen-activated protein kinase kinase 4 | MAP2K4 | NM-003010 | 0.117 | 0.154 |
| Mitogen-activated protein kinase kinase kinase 1 | MAP3K1 | NM-005921 | 0.014 | 0.016 |
| Mitogen-activated protein kinase kinase kinase kinase 4 | MAP4K4 | NM-004834 | 1.32 | 1 |
aAccession numbers indicate the sequence used as Super Array analysis.
b Fold change value of a gene following P. gingivalis challenge.
c Fold change value of a gene following P. intermedia challenge. Fold change of mRNA level was calculated relative to the expression value in non-challenged cells. Fold-change values less than one indicate a negative or downregulation.

