Materials
Trolox [(±)-6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid], an HPLC grade methanol, ethanol and usnic acid were purchased from Sigma–Aldrich (Steinheim, Germany). Stictic acid was purchased from ChromaDex (California,USA). Analytical-grade acetone, dimethyl sulfoxide (DMSO), tetrahydrofuran and orthophosphoric acid (89%) were purchased from Merck (Merck, Darmstadt, Germany).
Lichen collection and identification
Lichen samples were collected in November 2012 from the trunks of
Abies sp. from Uludag Mountain, Bursa, Turkey. The samples were identified by Seyhan Oran using standard methods and information from the literature (
34,
35). A voucher specimen of each species (
U. filipendula 16444,
U. fulvoreagens 16445,
U. intermedia 16446) was deposited at the Herbarium of Uludag University (BULU), Bursa, Turkey, for future reference.
Extraction
Air-dried and cleaned lichen materials were ground in a household blender. The lichen samples (1 g) were separately blended with 40 mL of organic solvent (acetone, methanol, or ethanol) at room temperature in the dark for 4 h with a magnetic stirrer. The samples (total volume 40 mL) were separated from the solid matrix by filtration through sheets of filter paper (Whatman No. 1). The extracts were used to determine the total antioxidant activity and total phenolic contents by the ABTS and Folin-Ciocalteu methods, respectively. The organic solvent extracts (5 mL) were evaporated to dryness. Finally, residues were dissolved in 2 mL of DMSO. The DMSO extracts were used for the HPLC analysis.
HPLC
An Agilent 1200 HPLC system (Waldbronn, Germany), consisting of a vacuum degasser, binary pump, autosampler and a diode-array detector was used. Chromatographic separations were carried out using an XBridge C18 (3.5 µm, 4.6 x 250 mm) column from Waters. The mobile phase consisted of 0.25 % orthophosphoric acid and 1.50 % tetrahydrofuran in water (solvent A) and methanol (solvent B). The gradient conditions are as follows; 0-15 min 30-70 % A, 15-30 min 70-100 % A, 30-35 min 100 % A, 35-36 min 100-30 % A, and 36-50 min 30 % A with a total run time of 50 min. The column was equilibrated for 10 min prior to each analysis. The flow rate was 0.25 mL/min, and the injection volume was 10 µL. The data acquisition and preprocessing were performed with ChemStation for LC (Agilent). The monitoring wavelength was 240 nm.
Antioxidant activity assay
The total antioxidant activity of
Usnea species was determined with the ABTS method as described by Sarıburun and others (
36). The absorbance was measured by spectrophotometry (Varian Cary 50, Australia) at 734 nm against a blank after 6 min. The results were expressed as mg of trolox equivalent (TE) per 100 g of dried weight.
Folin-Ciocalteu method
The total phenolic content as determined by the Folin-Ciocalteu reagent was carried out according to the procedure reported by Sarıburun and others (
36). The absorbance was measured by spectrophotometry (Varian Cary 50, Australia) at 750 nm. The total phenols were expressed as mg of gallic acid equivalent (GAE) per 100 g of dried weight.
Bacterial strains
The bacterial strains that were used in this study were Escherichia coli ATCC 25922, Escherichia coli O157:H7, Staphylococcus aureus ATCC 25923, Staphylococcus aureus ATCC 33591 and eight FQ-resistant E. coli isolates.
Determination of Minimum Inhibitory Concentration (MIC)
Broth microdilution testing was performed to determine the MICs of the lichen species according to the guidelines of the Clinical Laboratory Standards Institute (CLSI, 2003). The bacterial cultures were prepared in Mueller-Hinton Broth (MHB) at 37 ºC for 16-20 h. Powdered lichens were extracted with methanol due to common use of methanol as a solvent for in-vitro susceptibility tests. The methanol extracts were dissolved in 20:80 methanol:PBS (phosphate buffered saline) (v/v). Freshly prepared stock solutions were sterilized using 0.20-μm single-use filter units (Minisart, Sartorius Stedim Biotech.). Dilutions ranging from 0.008 to 256 mg/L were prepared in MHB, and inocula with a density equivalent to 0.5 McFarland turbidity were added to tubes containing the extracts’ dilutions. After incubating at 37 ºC for 16-20 h, the MICs were defined as the minimum concentration of extract that inhibited the growth of the organism. The optical densities (ODs) of the cultures were measured at a wavelength of 595 nm (Bio-Rad, iMark).