| Genes Associated with Thyroid Dysgenesis |
| NKX2-1 (600635) | Autosomal dominant | Variable | Brain-Lung-Thyroid syndrome: characterized by congenital hypothyroidism, neurological symptoms (hypotonia evolving to benign hereditary chorea, and pulmonary symptoms (respiratory distress) |
| FOXE1 (602617) | Autosomal recessive | Athyreosis, severe hypoplasia | Bamforth-Lazarus syndrome: characterized by thyroid dysgenesis (in most cases athyreosis), cleft palate, and spiky hair, with or without choanal atresia, and bifid epiglottis |
| PAX8 (167415) | Autosomal dominant | Variable | Urogenital tract malformation (horseshoe kidney, renal agenesis, ureter, and testes anomalies) |
| NKX2-5 (600584) | Unclear | Thyroid in situ, variable hypothyroidism | Congenital cardiac anomalies |
| GLIS3 (610192) | Autosomal recessive | Variable | Neonatal diabetes, polycystic kidneys, and cholestasis |
| JAG1 (601920) | Autosomal dominant | Variable orthotopic hypoplasia | Cardiac malformations and Alagille syndrome (characterized by chronic cholestasis, butterfly vertebrae, posterior embryotoxon, and cardiovascular anomalies) |
| TBX1 (602054) | Autosomal dominant | Thyroid in situ | DiGeorge syndrome with congenital heart defects |
| NTN1 (601614) | Unknown inheritance | Thyroid ectopy | Arthrogryposis |
| CDCA8 (609977) | Autosomal dominant or autosomal recessive | Thyroid ectopy, athyreosis, hemiagenesis, thyroid asymmetry | |
| TUBB1 (612901) | Autosomal dominant | Thyroid dysgenesis | Congenital macrothrombocytopenia |
| Genes Associated with Thyroid Dyshormonogenesis |
| TSHR (603372) | Autosomal dominant or autosomal recessive | Complete or partial resistance to TSH, mild hypothyroidism | |
| GNAS (139320) | Maternal inheritance, parental imprinting of gene locus | Partial resistance to TSH, mild hypothyroidism | Pseudohypoparathyroidism (multiple hormone resistances) |
| SLC5A5 (601843) | Autosomal recessive | Absent or low iodide uptake at scintiscan, variable hypothyroidism, and goiter | Congenital Iodide Transport Defect (ITD) due to sodium-iodide symporter (NIS) mutation |
| SLC26A4/PDS (605646) | Autosomal recessive | Partial iodide organification defect, mild to moderate hypothyroidism, goiter, high serum thyroglobulin | Pendred syndrome: characterized by sensorineural hearing loss with an enlarged vestibular aqueduct, predisposition to alkalosis |
| SLC26A7 (608479) | Autosomal recessive | Goiter, variable hypothyroidism, conserved iodide uptake, partial defect at perchlorate discharge, high serum thyroglobulin | Normal hearing |
| DUOX1/DUOX2 (606758/606759) | Autosomal dominant or autosomal recessive | Partial or complete iodide organification defect, goiter, transient or permanent hypothyroidism of variable severity, high serum thyroglobulin | |
| DUOXA2 (612772) | Autosomal recessive | Partial or complete iodide organification defect, goiter, transient or permanent hypothyroidism of variable severity, high serum thyroglobulin | |
| TPO (606765) | Autosomal recessive | Complete iodide organification defect, severe hypothyroidism, goiter, high serum thyroglobulin | |
| TG (188450) | Autosomal recessive | High iodide uptake, variable hypothyroidism, congenital or rapidly growing goiter, low serum thyroglobulin | |
| IYD/DEHAL (612025) | Autosomal recessive or autosomal dominant with Incomplete penetrance | Conserved iodide uptake, negative perchlorate discharge test, goiter, variable hypothyroidism, high serum thyroglobulin, and MIT or DIT concentrations in serum and urine | |
| Genes Associated with Isolated Central Congenital Hypothyroidism |
| TSHβ (188540) | Autosomal recessive | Neonatal onset of severe hypothyroidism with low TSH | High glycoprotein hormone α-subunit (αGSU) and normal prolactin serum levels, pituitary hyperplasia reversible on levothyroxine |
| TRHR (188545) | Autosomal recessive | Normal TSH and low prolactin serum levels blunted TSH and prolactin responses to TRH | Based on a few described families: Male index cases with growth retardation and overweight during childhood; one female proband with prolonged neonatal jaundice |
| TBL1X (300196) | X-linked | Mild isolated central congenital hypothyroidism in males with normal TSH serum levels and normal response to TRH stimulation test; low-normal FT4 values to mild hypothyroidism in females | Sensorineural hearing loss |
| IRS4 (300904) | X-linked | Mild isolated central congenital hypothyroidism in males with normal TSH serum levels, blunted TSH response to TRH; low-normal FT4 values in females | |
| Genes Associated with Multiple Pituitary Hormone Deficiencies |
| IGSF1 (300137) | X-linked | Normal TSH serum levels and blunted response to TRH test; males are preferentially affected | Low prolactin levels and variable GH deficiency (childhood), acromegaloid facies (adulthood), possible transient mild hypocortisolism and metabolic syndrome; late adrenarche and delayed pubertal testosterone rise in males, dissociated from testicular growth leading to postpubertal macroorchidism |
| PROP1 (601538) | Autosomal recessive | Variable age of onset | Combined pituitary hormone deficiencies (including GH, prolactin, LH, and FSH) and delayed ACTH deficiency, small to large pituitary gland volume |
| POU1F1 (173110) | Autosomal dominant or autosomal recessive | Variable age of onset | GH and prolactin deficiencies, prominent forehead, mid-face hypoplasia, saddle nose, and deep-set eyes |
| HESX1 (601802) | Autosomal dominant or autosomal recessive | Central congenital hypothyroidism | Hypopituitarism associated with septo-optic dysplasia (SOD) |
| SOX3 (313430) | X-linked | Central congenital hypothyroidism | Hypoplastic anterior pituitary with ectopic posterior pituitary, persistent craniopharyngeal canal, and learning difficulties |
| OTX2 (600037) | Autosomal dominant | Central congenital hypothyroidism | Anterior pituitary hypoplasia with ectopic posterior pituitary and ocular defects (ano- or micro-ophthalmia and early-onset retinal dystrophy) |
| LHX3 (600577) | Autosomal recessive | Central congenital hypothyroidism | Hypopituitarism with variable ACTH deficiency, small to large pituitary gland volume, short and rigid cervical spine, and variable hearing loss |
| LHX4 (602146) | Autosomal dominant or autosomal recessive | Central congenital hypothyroidism | Variable hypopituitarism, anterior pituitary hypoplasia with ectopic posterior pituitary, Arnold-Chiari syndrome, hypoplasia of the corpus callosum |
| LEPR (601007) | Autosomal recessive | Central congenital hypothyroidism | Hyperphagia, obesity, and combined with hypogonadotropic hypogonadism |
| SOX2 (184429) | Autosomal dominant | Central congenital hypothyroidism | Variable hypopituitarism, pituitary hypoplasia, microphthalmia, variable learning difficulties |
| Genetic Defects Variably Associated with Central Congenital Hypothyroidism |
| PROKR2 (607123) | Autosomal dominant or autosomal recessive | Variable TSH defects | Variable hypopituitarism associated with septo-optic dysplasia or pituitary stalk interruption syndrome |
| NFKB2 (164012) | Autosomal dominant | Variable TSH defects | Deficient anterior pituitary with variable immune deficiency syndrome associated with ACTH deficiency and variable GH deficiency |
| CHD7 (608892) | Autosomal dominant | Variable TSH defects | Coloboma, Heart anomaly, choanal Atresia, Retardation, Genital and Ear anomalies (CHARGE) syndrome with ectopic posterior pituitary and variable LH, FSH, and GH defects |
| FGFR1 (136350) | Autosomal dominant | Variable TSH defects | Kallman syndrome and normosmic congenital hypogonadotropic hypogonadism, a variable related to other pituitary hormone defects including TSH deficiency, septo-optic dysplasia, and ectopic posterior pituitary |
| FGF8 (600483) | Autosomal recessive | Variable TSH defects | Kallman syndrome and normosmic congenital hypogonadotropic hypogonadism, a variable related to other pituitary hormones' defects including TSH, holoprosencephaly, and corpus callosum agenesia |
| FOXA2 (600288) | Autosomal dominant | TSH defects | Hypopituitarism with craniofacial and endodermal organ abnormalities and hyperinsulinism |