1. Background
2. Objectives
3. Materials and Methods
3.1. Ethics Statement
3.2. Isolation of Lactic Acid Bacteria and Bifidobacteria From Infant Feces
3.3. Bacterial Strains and Cultivation Conditions
3.4. Survival of Probiotic Bacteria in the Upper Gastrointestinal Conditions
3.4.1. Tolerance to Bile



3.4.2. Tolerance to Simulated Gastric Juice

3.4.3. Sequential Exposures of Lactic Acid Bacteria and Bifidobacteria to Gastric Acid and Bile
3.5. Analysis of 16S rDNA Sequences for Identification of Lactic Acid Bacteria and Bifidobacteria
3.6. Antibacterial Activity Assay
3.7. Adhesion Assay

3.8. Determination of Competitive Exclusion of Food-Borne Pathogens
3.9. Statistical Analysis
4. Results
4.1. Survivals of Lactic Acid Bacteria and Bifidobacteria Through the Upper Part of the Gastrointestinal Tract
| Strains | Sequential Acid (3 h) and Bile (6 h) Exposures | ||||
|---|---|---|---|---|---|
| Initial (Log CFU mL-1) or (Log Cell mL-1) b | Acid Exposure (Log CFU mL-1) or (Log Cell mL-1) b | % Survival b,c | Bile Exposure (Log CFU mL-1) or (Log Cell mL-1) b | Survival, % b,c | |
| Lactic acid bacteria | |||||
| L. rhamnosus CIF1A1 | 8.88 ± 0.10 | 8.30 ± 0.11 | 93.47 ± 1.22 | 1.31 ± 0.04 | 14.80 ± 0.48 |
| L. rhamnosus CIF1A2 | 8.73 ± 0.08 | 8.58 ± 0.19 | 98.33 ± 2.16 | 1.61 ± 0.03 | 18.39 ± 0.31 |
| L. rhamnosus CIF1A9 | 8.54 ± 0.55 | 6.84 ± 0.11 | 80.08 ± 1.26 | 3.77 ± 0.06 | 44.17 ± 0.64 |
| L. rhamnosus CIF1A10 | 8.78 ± 0.10 | 8.42 ± 0.07 | 95.91 ± 0.78 | - | - |
| L. casei NIF1A7 | 9.24 ± 0.14 | 7.88 ± 0.59 | 85.22 ± 6.34 | 6.74 ± 0.04 | 72.94 ± 0.40 |
| L. casei NIF1AN12 | 8.36 ± 0.51 | 8.25 ± 0.03 | 98.67 ± 0.39 | 6.09 ± 0.20 | 72.79 ± 2.43 |
| L. plantarum CIF17A2 | 9.19 ± 0.01 | 8.18 ± 0.14 | 89.03 ± 1.48 | 6.86 ± 0.18 | 74.62 ± 1.95 |
| L. plantarum CIF17A4 | 9.17 ± 0.07 | 8.52 ± 0.02 | 92.89 ± 0.18 | 6.90 ± 0.14 | 75.22 ± 1.52 |
| L. plantarum CIF17A5 | 9.29 ± 0.08 | 8.10 ± 0.03 | 87.26 ± 0.30 | 6.77 ± 0.39 | 72.85 ± 4.21 |
| L. plantarum CIF17AN2 | 9.17 ± 0.12 | 8.31 ± 0.06 | 90.54 ± 0.65 | 7.14 ± 0.08 | 77.87 ± 0.85 |
| L. plantarum CIF17AN8 | 9.21 ± 0.03 | 8.31 ± 0.02 | 90.27 ± 0.22 | 7.37 ± 0.02 | 80.03 ± 0.24 |
| Bifidobacteria | |||||
| B. longum NIF3AN3 | 7.68 ± 0.05 | 7.29 ± 0.07 | 94.98 ± 0.22 | 6.79 ± 0.09 | 88.45 ± 2.22 |
| B. longum NIF7AN2 | 8.01 ± 0.01 | 7.45 ± 0.03 | 93.04 ± 01.20 | 7.68 ± 0.20 | 95.84 ± 2.14 |
| B. bifidum NIF7AN3 | 7.63 ± 0.013 | 6.67 ± 0.028 | 87.36 ± 2.10 | 7.09 ± 0.11 | 92.94 ± 0.82 |
| B. bifidum NIF7AN5 | 8.14 ± 0.03 | 6.60 ± 0.05 | 81.15 ± 0.82 | 7.08 ± 0.09 | 86.97 ± 0.88 |
| B. bifidum NIF7AN10 | 7.70 ± 0.12 | 6.33 ± 0.25 | 82.27 ± 0.42 | 6.89 ± 0.16 | 89.52 ± 0.64 |
a Abbreviation: CFU, colony forming unit.
b Results are mean values of the triple determinations ± Standard Deviation (SD).
c Different letters within the same column indicate significant difference (P < 0.05).
4.2. Probiotic Identification and Phylogenetic Analysis
4.3. Antimicrobial Secretions of the Probiotic Lactic Acid Bacteria and Bifidobacteria
| Test Strains | Inhibition Activity (AU mL-1) | |||||
|---|---|---|---|---|---|---|
| E. coli TISTR 780 | S. sonnei | S. flexneri | Sal. Paratyphi A | Sal. Typhimurium SA2093 | S. aureus TISTR 1466 | |
| Lactic acid bacteria | ||||||
| L. rhamnosus CIF1A1 (pH4.04) | 40 | 40 | 40 | 40 | 40 | 40 |
| L. rhamnosus CIF1A2 (pH4.05) CFCS | 40 | 40 | 40 | 40 | 40 | 40 |
| L. rhamnosus CIF1A9 (pH4.06) CFCS | 40 | 20 | 20 | 20 | 20 | 40 |
| L. rhamnosus CIF1A10 (pH3.9) CFCS | 80 | 40 | 40 | 40 | 40 | 80 |
| L. casei NIF1A7 (pH 3.9) CFCS | 20 | 20 | 20 | 20 | 20 | 20 |
| L. casei NIF1AN12 (pH4.04) CFCS | 20 | 20 | 20 | 20 | 20 | 20 |
| L. plantarum CIF17A2 (pH3.9) CFCS | 20 | 20 | 20 | 20 | 40 | 20 |
| L. plantarum CIF17A4 (pH3.9) CFCS | 20 | 20 | 20 | 20 | 40 | 20 |
| L. plantarum CIF17A5 (pH3.9) CFCS | 20 | 20 | 20 | 20 | 40 | 20 |
| L. plantarum CIF17AN2 (pH3.9) CFCS | 20 | 40 | 40 | 40 | 40 | 20 |
| L. plantarum CIF17AN8 (pH3.9) CFCS | 20 | 40 | 40 | 40 | 40 | 20 |
| Bifidobacteria | ||||||
| B. longum subsp. longumNIF3AN3 (pH4.25) CFCS | 20 | 20 | 20 | 20 | 80 | 20 |
| B. longum subsp. longumNIF7AN1 (pH4.41) CFCS | 10 | 10 | 10 | 10 | 80 | 10 |
| B. bifidum NIF7AN2 (pH4.62) CFCS | 10 | 10 | 10 | 10 | 80 | 10 |
| B. bifidum NIF7AN5 (pH4.65) CFCS | 10 | 10 | 10 | 10 | 80 | 10 |
| B. bifidum NIF7AN10 (pH4.25) | 20 | 20 | 20 | 20 | 80 | 20 |
4.4. Adhesion Assay
| Strains | Competitive Exclusion, % | |||||
|---|---|---|---|---|---|---|
| E. coli TISTR 780 | S. sonnei | S. flexneri | Sal. Paratyphi A | Sal. Typhimurium SA2093 | S. aureus TISTR 1466 | |
| Lactic acid bacteria | ||||||
| L. casei NIF1A7 | 1.92 ± 2.59 | -1.49 ± 3.14 | 3.91 ± 1.40 | 13.47 ± 3.08 | 12.74 ± 5.15 | 10.93 ± 2.90 |
| L. casei NIF1AN12 | 1.26 ± 4.93 | 2.09 ± 3.33 | 0.37 ± 0.00 | 4.09 ± 2.63 | 8.20 ± 3.07 | 5.85 ± 2.52 |
| L. plantarum CIF17A2 | -7.98 ± 0.97 | 6.75 ± 0.00 | 2.81 ± 2.53 | 3.17 ± 1.45 | 5.89 ± 2.44 | 4.92 ± 1.24 |
| L. plantarum CIF17A4 | -4.01 ± 3.19 | 3.43 ± 2.87 | 0.37 ± 0.00 | 6.66 ± 0.15 | 9.89 ± 3.99 | 5.70 ± 0.62 |
| L. plantarum CIF17A5 | -3.33 ± 3.66 | 3.43 ± 2.87 | 2.05 ± 2.91 | 5.00 ± 3.03 | 7.96 ± 1.47 | 5.29 ± 0.68 |
| L. plantarum CIF17AN2 | -10.20 ± 3.22 | -3.58 ± 1.58 | 5.41 ± 0.00 | 6.93 ± 3.16 | 16.52 ± 1.99 | 5.78 ± 1.88 |
| L. plantarum CIF17AN8 | -10.45 ± 0.95 | 2.26 ± 4.27 | 2.81 ± 2.53 | 6.66 ± 0.15 | 16.16 ± 2.45 | 5.30 ± 0.93 |
| L. plantarum 299V | 1.88 ± 6.42 | 2.37 ± 2.58 | -1.16 ± 1.85 | 6.92 ± 3.27 | 7.54 ± 1.65 | 6.09 ± 2.79 |
| Bifidobacteria | ||||||
| B. longum subsp. longum NIF3AN3 | 43.81 ± 4.42 | 35.33 ± 1.24 | 34.31 ± 2.40 | 18.49 ± 0.12 | 1.16 ± 0.32 | 14.37 ± 2.82 |
| B. longum subsp. longum NIF7AN2 | 40.74 ± 1.87 | 34.38 ± 1.99 | 34.80 ± 2.94 | 17.78 ± 2.01 | 30.51 ± 8.41 | 37.96 ± 1.78 |
| B. bifidum NIF7AN3 | 36.69 ± 0.64 | 35.39 ± 1.87 | 38.46 ± 0.60 | 13.35 ± 0.55 | 22.86 ± 6.62 | 23.59 ± 0.49 |
| B. bifidum NIF7AN5 | 31.71 ± 1.44 | 33.67 ± 0.37 | 32.49 ± 2.04 | 35.33 ± 2.96 | 2.14 ± 3.44 | 22.51 ± 0.00 |
| B. bifidum NIF7AN10 | 41.60 ± 3.44 | 50.55 ± 2.50 | 34.06 ± 0.38 | 38.69 ± 2.14 | 29.86 ± 10.30 | 27.79 ± 1.25 |
a A higher value represents high inhibition of probiotic strains against adhesion of food borne pathogens, whereas a lower value indicates less inhibitory ability of probiotic strains.
b Different letters within the same column indicate significant difference (P < 0.05).

