Total DNA was extracted using the QIAamp DNA Mini kit (Qiagen, Hilden, Germany), following the manufacturer’s instructions. HPV genotyping was carried out using the INNO-LiPA HPV genotyping extra assay (Innogenetics NV, Ghent, Belgium), according to the manufacturer’s instructions. The INNO-LiPA HPV assay is one of the most widely used HPV genotyping tests based on the concept of reverse hybridization, planned for the identification of 28 different genotypes of HPV including 15 HR genotypes (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 68, 73 and 82 ), three probable HR (pHR) genotypes (26, 53 and 66), seven LR genotypes (6, 11, 40, 43, 44, 54 and 70) and three genotypes (69, 71 and 74) which are not categorized as HR, pHR or LR genotypes, based on Munoz et al. (
23). A 65 bp region of HPV L1 gene was amplified using consensus SPF10 primers, followed by denaturation and hybridization of the resulting biotinylated amplicons, with specific oligonucleotide probes fixed on membrane strips (
24). To control the specimen quality and DNA extraction an additional primer pair targeting, the human HLA-DPB1 gene was included.
After PCR amplification using the INNO-LiPA HPV Genotyping Extra Amp, the amplified biotinylated product was denatured using an alkaline solution. The denatured PCR product was then hybridized to probes immobilized on membrane strips. Thereafter, streptavidin-conjugated alkaline phosphatase was added, which binds to any biotinylated PCR product/probe hybrid previously formed. Finally, the PCR product bound to a specific probe was detected by adding BCIP/NBT chromogen. The results were interpreted visually using the interpretation chart provided.