Various metabolic and cardiovascular disorders such as endothelial dysfunction are associated with obesity in childhood and adolescence (
1,
2). Studies have shown that more than half of children and adolescents will be obese in adulthood and show a significantly higher risk of non-communicable diseases such as cardiovascular diseases, cancer, and type 2 diabetes mellitus (
3). It is widely agreed that inflammation can contribute to the development of atherosclerosis and the risk of cardiovascular disease, and the role of C-reactive protein as an important inflammatory marker in atherosclerotic disease is very complex (
4). Recent evidence suggests that miRNAs are involved in almost all physiological responses, and genetic studies using new technologies show that some miRNAs play a vital role in the pathology of cardiovascular disease and normal physiological functions (
5). Among numerous miRNAs identified, miR-125a-5p has been identified as a potential biomarker associated with endothelial dysfunction. It has been shown to play a critical role in endothelial tissue function by decreasing cell proliferation and increasing apoptosis and inflammation (
6,
7).
The C-reactive protein (CRP) is involved in the transfer of monocytes into the arterial wall and their adhesion, and by inhibiting nitric oxide production, they change the rapid and appropriate response of blood vessels to a specific stimulus (
8). Endothelial dysfunction is an early marker of cardiac disease, decreased normal hemostatic function of blood vessels (
9), and development of hyperlipidemia and cardiovascular disease (
10,
11). On the other hand, CRP is an essential factor in atherosclerosis at all ages, and obesity is a significant determinant of increased CRP concentration (
12). Nowadays, it is accepted that regular physical activities are beneficial for the health and quality of life, with little cost and no side effects, resulting in numerous adaptations (
7). Recent studies have shown that children and adolescents are sedentary 64% of their waking time on average (
13), which causes obesity and increases the risk of cardiovascular disease. The school environment provides a unique opportunity to improve the physical activity of children and adolescents, as they spend a significant part of their waking hours in this environment for more than 10 months a year (
14). School-based exercise programs were effective for aerobic power, weight loss, and clinical indicators of obese and normal children and patients (
15,
16). Recently, After-school Physical Activity (APA) interventions are more common because schools are safe places to host and sustain programs for enhancing physical activity (
17).
In recent years, different training methods have been studied for childhood obesity and some biomarkers related to various diseases, and the results typically indicate the effectiveness of various exercises. However, there is no consensus on training type, duration, and intensity (
18). Although some exercise methods, such as high-intensity intermittent training, need much less time and have significant effectiveness, they are very complicated for obese children to perform and require much motivation. On the other side, low-intensity, long-term aerobic exercise is generally monotonous and often dull due to its nature. Therefore, professionals should seek to introduce specific training methods that are more operational in terms of execution time, intensity, and variety of training. Previous studies have less emphasized the effect of APA on cardiovascular factors in children, and the impacts of different exercise modes on vascular inflammation markers and lipid profile have been investigated rarely.