In the clinical management of organ transplant recipients, infectious diseases continue to be a major cause of morbidity and mortality. Every year about 1.7 million cases of nosocomial infections have been reported all around the world (
1). In the past, pathogenic species have been limited in extent; however, recently, the number of pathogenic and opportunistic species is considerably increased (
2). Studies have shown that there is a significant relationship between hospital infections and airborne bioaerosols (
3). Fungi are present in indoor environments and play important roles in human diseases. These infections are increasing in immunosuppressed patients such as patients undergoing hematopoietic stem cell transplantation, chemotherapy for leukaemia, or AIDS (
4). Aspergillus is a common fungus in invasive infections, however, other fungi are appearing as important pathogens in immunosuppressed patients (
5). Most invasive infections are acquired from indoor air. For reducing concentrations of airborne fungal, it is necessary to control measures in clinical environments (
6,
7). Opportunistic fungal infections are the main reason of death among transplant patients and the risk of nosocomial fungal infections after transplantation may increase (
7,
8). Reduction in the patient’s defensive ability due to organ transplantation may lead to the uncontrolled multiplication of fungi and consequent onset of infection (
9,
10). Also, we cannot completely eliminate fungi from indoor clinical environments. Fungi exposure in clinical units is unavoidable, however, for control measures, the air filtration systems can be used (
11). The quality of the air in an organ transplant hospital is a significant role to control infections. One of the most important steps to reduce hospital infection is regular fungal monitoring (
12). The present study is the first research about fungal contaminations in an organ transplant hospital in Iran. The results of this study can be used to describe the state of fungal contamination in operating theatres and wards of the hospital. Using an efficient ventilation system, reviewing the disinfection procedure, and controlling nosocomial infections are effective in decreasing fungal contamination.