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Advantage of Applying OSC to 1H NMR-Based Metabonomic Data of Celiac Disease

Authors:
Mostafa Rezaei-TaviraniMostafa Rezaei-Tavirani1, Fariba FathiFariba Fathi2, Fatemeh DarvizehFatemeh Darvizeh3, Mohamad Reza Reza ZaliMohamad Reza Reza Zali4, Mohamad Rostami Rostami NejadMohamad Rostami Rostami Nejad5, Kamran RostamiKamran Rostami6, Mohsen TafazzoliMohsen Tafazzoli2,*, Afsaneh Arefi Arefi oskouieAfsaneh Arefi Arefi oskouie6,*, Seyed AbdolReza AbdolReza Mortazavi-TabatabaeiSeyed AbdolReza AbdolReza Mortazavi-Tabatabaei6
1Proteomics Research Center, Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, IR Iran
2Department of Chemistry, Sharif University of Technology, Tafazzoli@sharif.edu, IR Iran
3Department of Medicine, Debrecen Medical School, Hungary
4Research Center for Gastroenterology and Liver Disease, Shahid Beheshti University of Medical Sciences, IR Iran
5Acute Medicine, Dudley Group of Hospital, UK
6Department of Basic Science Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, a.arefi@sbmu.ir, IR Iran
Corresponding Authors:


International Journal of Endocrinology and Metabolism:Vol. 10, issue 3; 548-552
Published online:Jun 30, 2012
Article type:Research Article
Received:Nov 02, 2011
Accepted:Apr 17, 2012
How to Cite:Mostafa Rezaei-TaviraniFariba FathiFatemeh DarvizehMohamad Reza Reza ZaliMohamad Rostami Rostami NejadKamran RostamiMohsen TafazzoliAfsaneh Arefi Arefi oskouieSeyed AbdolReza AbdolReza Mortazavi-Tabatabaeiet al.Advantage of Applying OSC to 1H NMR-Based Metabonomic Data of Celiac Disease.10(3):548-552.https://doi.org/10.5812/ijem.3058.

Abstract

Background:

Celiac disease (CD) is a disorder associated with body reaction to gluten. After the gluten intake, an immune reaction against the protein occurs and damages villi of small intestine in celiac patients gradually.

Objectives:

The OSC, a filtering method for minimization of inter- and intra-spectrometer variations that influence on data acquisition, was applied to biofluid NMR data of CD patients.

Patients and Methods:

In this study, metabolites of total 56 serum samples from 12 CD patients, 15 CD patients taking gluten-free diet (GFD), and 29 healthy cases were analyzed using nuclear magnetic resonance (NMR) and associated theoretical analysis. Employing ProMetab (version ProMetab_v3_3) software, data obtained from NMR spectra were reduced and orthogonal signal correction (OSC) effect on celiac disease metabonomics before and after the separation by principle component analysis (PCA) was investigated.

Results:

The three groups were separated by OSC and findings were analyzed by partial least squares discriminant analysis (PLS-DA) method. Root mean square error of calibration (RMSEc) and correlation coefficient of calibration (Rc) for PLS-DA referred to an efficient group separation filtered by OSC.

Conclusions:

The applied leave-one-out cross-validation to PLS-DA method performed along with OSC confirmed validation of data analysis. Finally four metabolites are introduced as CD biomarkers.

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