3.1. Preparation of the Gum of Ferula gummosa Gum
In May and June 2022, F. gummosa gum (48590-TARI) was collected from the root source in northeastern Iran. A stock solution of the gum, containing 50 µg/mL dissolved in dimethyl sulfoxide (DMSO), was prepared and stored at -20°C until required.
3.2. Cell Culture
The A-375 and HEK-293T cells were obtained from the National Center for Genetic and Biological Reserves of Iran in Tehran. They were maintained in RPMI-1640 medium (Sigma), supplemented with 10% fetal bovine serum (FBS; Sigma) and 1% penicillin/streptomycin (Sigma).
3.3. MTT Assay
Cell viability was measured using the MTT assay. Briefly, 6 × 10³ cells were plated in each well of a 96-well plate with 150 µL of growth medium. The cells were grown to 70% confluency and subsequently exposed to 2, 5, 10, 20, 30, 40, 50, 60, and 70 µg/µL of the gum for 48 hours.
After discarding the culture medium, 100 µL of PBS containing 5 µg/µL of MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyl tetrazolium bromide) was added to each well. After three hours, the MTT solution was discarded and replaced with 100 µL of DMSO. Absorbance was then measured at 590 nm using a BioTek ELISA reader (USA). Each assay was performed in triplicate.
3.4. Acridine Orange/Ethidium Bromide Staining
A total of 6 × 10³ A-375 cells were cultured on gelatin-coated coverslips in individual wells of a 6-well plate until they reached 70% confluency. The cells were then treated with varying concentrations (4, 6, 8, 10, and 12 μg/mL) of the gum for 48 hours. Subsequently, the cells were washed with PBS and fixed using a 50:50 (v/v) mixture of cooled acetone and methanol for 20 minutes in a freezer.
Following fixation, the coverslip-mounted cells were submerged in a solution containing 100 µg/mL acridine orange (AO) and 100 µg/mL ethidium bromide (EtBr) for 30 minutes. The coverslips were then rinsed with PBS, dried, and observed using ultraviolet microscopy. All experiments were performed in triplicate.
3.5. DNA Laddering
In a 6-well plate, 8 × 10³ A-375 cells were seeded and grown to 70% confluency. Subsequently, the cells were exposed to 4, 6, 8, 9, 10, 11, and 12 μg/mL of F. gummosa gum for 48 hours. The cells were collected using 10% EDTA-Trypsin and centrifuged at 1500 rpm for 5 minutes.
The pellets were treated with a cell lysis buffer containing 0.01 M Tris-HCl (pH 8.0), 0.1 M sodium chloride, 0.025 M EDTA, 1% (w/v) sodium dodecyl sulfate (SDS), and 0.3 mg/mL proteinase K, then incubated at 50°C overnight. The lysate was treated with 10 µg/mL RNase and incubated for 1 hour at 37°C, followed by centrifugation at 13,200 rpm. The upper phase was separated using a solution of phenol, chloroform, and isoamyl alcohol in a 25:24:1 ratio. DNA was then precipitated with ethanol, incubated for 2 hours in a freezer, and centrifuged at 13,200 rpm for 3 minutes.
The resulting pellets were solubilized in 15 µL of dH₂O, loaded onto a 1% agarose gel, and subjected to electrophoresis for 1 hour. The gel was stained with EtBr and visualized using the Red-Type AlphaImager system (Proteinsimple, USA). All experiments were performed in triplicate.
3.6. Clonogenic Assay
The clonogenic assay is a standard method for assessing a single cell's ability to proliferate and generate a colony containing at least 50 cells (
16). A total of 50 A-375 cells per well were plated in a 24-well plate in triplicate to allow for adherence. The cells were then exposed to 4, 6, 8, 10, and 12 µg/mL of the gum over a 7-day period.
Following the incubation period, the cells were fixed using a 50:50 (v/v) mixture of cooled acetone and methanol for 15 minutes and subsequently stained with a 0.5% crystal violet solution for 2 hours. The cells were then air-dried, and the colonies were observed using a stereomicroscope (Olympus, Japan). All assays were conducted in triplicate.
3.7. Cell Scratch Assay
Each well of a 6-well plate was seeded with 8 × 10³ A-375 cells and cultured until the cells reached confluence. A scratch was then created in the cell monolayer using a sterile pipette tip, and floating or damaged cells were removed by rinsing with PBS. The cells were subsequently exposed to 4, 6, 8, and 10 µg/mL of the gum for 48 hours.
After treatment, the plates were imaged, and the wound areas were quantified using ImageJ software. All assays were performed in triplicate.
3.8. Statistical Analysis
The results are presented as the mean with standard deviation, derived from three independent experiments. Statistical analysis was performed using SPSS software (IBM, Statistic 25), while IC50 values were calculated using Excel (Office 2016) and GraphPad Prism version 8 (GraphPad Software, La Jolla, CA, USA, http://www.graphpad.com/). Wound surface areas were quantified using ImageJ software version 1.40g (NIH, Bethesda, MD, USA). Results were considered statistically significant when the P-value was less than 0.05.