Genotypic results were obtained using amplified fragments and sequencing of the TK and pol genes. The results are shown in
Tables 2 and
3. In pol, 31 amino acid substitutions, compared with the reference strain without a premature stop codon, were detected. These substitutions were the result of natural gene polymorphism. The 31 amino acid substitutions were detected in six isolates from patients who received transplants and were associated with the conserved region IV (K459R, S462A, A467S, K469R, I472V, K474Q, T482S, and M501I), the C region (N549S, A551S, M553L, N554S, T556S, and S557N), the VII region (Y946F), and noncoding regions (V175L, Y176H, Q180R, E188K, E222K, S250T, V244L, K220R, Y217L, K274Q, K279S, T282S, Q284R, Q68R, Q38K, and Q42K). Four of the 31 amino acid changes (M553L, M501I, E188K, and E222K) were previously associated with ACV susceptibility (
Table 2 and
Figure 1A). Surprisingly, the remaining 20 isolates from immunocompetent individuals showed no substitutions in comparison with the HSV-1 reference strain 17. In the TK gene, all 26 HSV-1 isolates contained polymorphism-associated non-synonymous mutations. The N23S and R281Q mutations were observed in all isolates. The K36E mutation was observed in one isolate, V348I was observed in the ninth isolate, R89Q was observed in the sixth isolate, Q370R was observed in the 11th isolate, G246E was observed in the fifth isolate, and I192F and R539Q were both observed in the fourth isolate (
Table 3 and
Figure 1B). Frameshift and nonsynonymous mutation did not confer susceptibility to ACV.