1. Background
2. Objectives
3. Methods
3.1. Ethics Statement
3.2. Collection of Isolates
3.3. Antimicrobial Susceptibility Testing
3.4. Drug-Resistance Genes
3.5. Resistance Gene Transfer Experiments
3.6. Plasmid Profiling
3.7. Genotypes and Homology of Drug-Resistance Isolates
4. Results
4.1. Molecular Epidemiology of K. pneumoniae
| Isolate No. | Patient Age (d) | Sex | Ward | Isolate Date | Specimen | PFGE Pattern | ST | EDTA | HTM | Resistance Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| E4 | 10 | M | Neonatal unit | 2011-12-30 | blood | D | 290 | + | - | IMP-8, TEM-1, CTXM-14 |
| E5 | 28 | F | Neonatal unit | 2012-5-17 | sputum | A | 54 | + | - | NDM-1, TEM-1, CTXM-14, DHA-1 |
| E6 | 23 | F | Neonatal unit | 2012-5-18 | sputum | A | 54 | + | - | NDM-1, TEM-1, CTXM-14, DHA-1 |
| E7 | 18 | M | Neonatal unit | 2012-5-24 | sputum | A | 54 | + | - | NDM-1, TEM-1, CTXM-14, DHA-1 |
| E8 | 2 | F | Neonatal unit | 2012-6-5 | sputum | A | 54 | + | - | NDM-1, TEM-1, CTXM-14, DHA-1 |
| E9 | 13 | M | Neonatal unit | 2012-7-27 | sputum | A | 54 | + | - | NDM-1, TEM-1, CTXM-14, DHA-1 |
| E11 | 13 | M | PICU | 2012-8-28 | sputum | C | 705 | + | + | IMP-4, TEM-1, CTXM-14 |
| E12 | 5 | M | PICU | 2012-8-28 | sputum | C | 705 | + | - | IMP-4, TEM-1, CTXM-14 |
| E14 | 14 | F | Neonatal unit | 2012-10-4 | sputum | B | 54 | + | - | IMP-4, TEM-1, CTXM-15, DHA-1 |
| E15 | 1 | F | Neonatal unit | 2012-10-16 | sputum | A | 54 | + | - | IMP-4, TEM-1, CTXM-15, DHA-1 |
| E16 | 3 | M | Neonatal unit | 2012-11-5 | umbilicus | A | 54 | + | - | IMP-4, TEM-1, CTXM-15 |
| E17 | 4 | F | Neonatal unit | 2012-11-9 | sputum | A | 54 | + | - | IMP-4, TEM-1, CTXM-15, DHA-1 |
| E18 | 10 | M | Neonatal unit | 2013-1-30 | sputum | A | 54 | + | - | IMP-4, TEM-1, CTXM-15 |
| E20 | 16 | M | Neonatal unit | 2013-2-27 | umbilicus | A | 54 | + | - | IMP-4, TEM-1, CTXM-15, DHA-1 |
| E21 | 25 | F | PICU | 2013-8-31 | sputum | E | 20 | + | - | NDM-1, TEM-1, CTXM-15, DHA-1 |
| E22 | 17 | M | Neonatal unit | 2013-10-17 | sputum | A | 54 | + | - | IMP-4, TEM-1, CTXM-15, DHA-1 |
Abbreviations: CTXM-14, CTX-M-14 Lactamase; CTXM-15, CTX-M-15 Lactamase; DHA-1, DHA-1 Beta-Lactamase; EDTA, EDTA Synergistic Test; F, Female; , HTM, Modified Hodge Test; IMP-4, Imipenemase-4, IMP-8, Imipenemase-8; M, male; NDM-1, New Delhi Metallo-Beta-Lactamase-1; PICU, Pediatric Intensive Care Unit; ST, Sequence Type; TEM-1, TEM1-Beta-Lactamase.
The dendrogram was generated with the Fingerprinting II Informatix software package (Bio-Rad Laboratories, Hercules, CA) showing fingerprint relationships (XbaI-PFGE) for 16 K. pneumonia strains. The phylogenetic tree was constructed using the Dice coefficient and UPGMA clustering. A genetic similarity index scale is shown in the left of the dendrogram. The PFGE types, sequence type, strain number, collection date and ward distribution are included in each PFGE lane.
4.2. Antimicrobial Susceptibility and Carbapenem Resistance Mechanism
| Isolate No. | EPT | IMP | MEM | SXT | TZP | KZ | CTN | CAZ | CRO | FEP | AZM | AK | GN | TOB | CIP | LEV | TGC | CO | FOS |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| E4 | 16 | 3 | 2 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 0.75 | 0.125 | 64 |
| E5 | > 32 | > 32 | > 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 0.5 | 0.125 | 16 |
| E6 | > 32 | 32 | > 32 | ≤ 1 | 128 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 0.5 | 0.125 | 32 |
| E7 | > 32 | 16 | > 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 0.75 | 0.125 | 32 |
| E8 | > 32 | > 32 | 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 0.5 | 0.5 | 0.5 | 0.125 | 16 |
| E9 | > 32 | > 32 | > 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 32 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 0.5 | 0.75 | 0.125 | 24 |
| E11 | 32 | 8 | 16 | ≥ 16 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | 2 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 1.5 | 0.125 | 1024 |
| E12 | > 32 | > 32 | > 32 | ≥ 16 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | 2 | ≤ 2 | ≥ 16 | 8 | 1 | 1 | 0.75 | 0.125 | 1024 |
| E14 | > 32 | 4 | 32 | ≤ 1 | 128 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 32 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 0.5 | 0.75 | 0.25 | 12 |
| E15 | 4 | 1 | 0.75 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 32 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | 1 | 0.5 | 0.5 | 0.125 | 8 |
| E16 | 32 | 2 | 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | ≤ 0.25 | ≤ 0.25 | 0.75 | 0.125 | 12 |
| E17 | 32 | 32 | 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | ≤ 0.25 | ≤ 0.25 | 0.5 | 0.125 | 16 |
| E18 | 4 | 0.5 | 1 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 32 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | ≤ 0.25 | ≤ 0.25 | 0.5 | 0.125 | 24 |
| E20 | > 32 | > 32 | 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | ≤ 0.25 | ≤ 0.25 | 0.5 | 0.125 | 24 |
| E21 | > 32 | 16 | > 32 | ≤ 1 | 128 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≤ 2 | ≤ 1 | 8 | 1 | 1 | 0.75 | 0.125 | 64 |
| E22 | > 32 | 32 | > 32 | ≤ 1 | 64 | ≥ 64 | ≥ 64 | ≥ 64 | ≥ 64 | 16 | ≥ 64 | ≤ 2 | ≥ 16 | 8 | ≤ 0.25 | ≤ 0.25 | 0.5 | 0.125 | 32 |
Abbreviations: AK, Amikacin; ATM, Aztreonam; CAZ, Ceftazidime; CIP, Ciprofloxacin; CN:, Gentamicin; CO, Colisin; CRO, Ceftriaxone; CTN, Ceftatan; EPT, Ertapenem; FEP, Cefepime; FOS, Fosfomycin; IMP, Imipenem; KZ, Cefazolin; LEV, Levofloxacin; MEM, Meropenem; SXT, Trimethoprim-Sulfamethoxazole; TGC, Tigecycline; TOB, Tobramycin; TZP, Piperacillin-Tazobactam.
