3.1. Plasmid Construction and Production of Recombinant HEV239
In order to construct the plasmid, the 368 - 606 amino acid sequences of ORF-2 of HEV (SAR-55 strain) and the 1 - 450 amino acid sequences of Beclin-1 were retrieved from Genbank databases with the GenBank accession numbers (“AAA45727.1 and NP-003757”). The synthetic genes were flanked by BamHI and SalI for Beclin-1 to facilitate subcloning. Moreover, recognition sequences for restriction enzymes (SalI and XhoI) were added at the beginning of the HEV239 gene; also, NheI and SmaI restriction sites were placed at the end of gene for subcloning into PUC19 and pVITRO, respectively. The genes were synthesized by Bio Basic Inc. Ontario, Canada and cloned into the Puc19 cloning vector. Furthermore, in order to express efficiently in prokaryotic cell, the codon optimization was performed for HEV239 gene and for increasing the efficiency of translation initiation, the Kozak sequences were placed in upstream of the both genes. For purification of protein and confirmation of gene expression, a polyhistidine-tag was added on the 5’ end of the genes.
For construction of the plasmid harboring HEV239 and Beclin1, the synthetized Beclin-1 was digested with the BamHI and SalI from Puc19. Then, they sub-cloned into multiple cloning site 1 (MCS1), which XhoI and NheI restriction enzymes were selected for sub-cloning synthetized HEV239 into MCS2 of the eukaryotic expression vector pVITRO2-neo-mcs (InvivoGen). All subcloning products were confirmed by sequencing. Bacterial strain Escherichia coli DH5 α (Pasteur Institute of Iran) was used for propagation and preparation of the pVITRO2 (InvivoGen) plasmid. For production of recombinant HEV239, the HEV239 was subcloned into the plasmid Pet26b (Novagen). The HEV239 protein was purified using Ni-NTA purification system (Qiagen, Hilden, Germany), according to the manufacturer’s instructions (data are not shown).
3.2. Cell Transfection
HEK293 cell line with Dulbecco modified Eagle medium (DMEM) supplemented with L-glutamine, 10% fetal bovine serum, 100 U/mL penicillin, and 100 µg/mL streptomycin were incubated at 37.0°C in 5% CO2. To measure autophagy, pVITRO, pVITRO-HEV239, pVITRO-Beclin1, and pVITRO-HEV239-Beclin1 plasmids were transfected into HEK293 cells by Lipofectamine 3000 transfection reagent according to the manufacturer’s instructions (Invitrogen). Briefly, the 5 µg of DNA and 10 µL of P3000TM solution were diluted in 250 µL of Opti-MEM without serum. After 5 minutes of incubation, the diluted DNA was combined with the diluted Lipofectamine 3000 and incubated for 5 minutes at room temperature (RT). Then, the mixture was added to each well and mixed gently. The cells were incubated at 37°C in a CO2 incubator for 48 hours until they are ready to assay for transgene expression. All experiments were performed in triplicate.
3.3. RNA Isolation and Quantitative Real-Time PCR
Total RNA was isolated by RNeasy plus Mini Kit (Qiagen, Germany), according to the manufacturer’s instructions, 48 hours post-transfection. DNase treatment was performed using the on-column DNase digestion (Qiagen, Germany). A total of 10 µg of total RNA was reverse transcribed using M-MulV Reverse Transcriptase with specific primer for the first-strand cDNA synthesis. It was subjected to real time quantitative PCR in triplicate on the Rotor-Gene 6000 (Corbett Life Science, Australia) and EvaGreen in qPCR master mix kit (YTA, Iran). Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) gene was considered as the reference gene for normalization of relative quantification. All designed primers were confirmed using the NCBI Blast tool against all available mRNA sequences to ensure specificity (
Table 1).
| Number | Gene | Primer Sequence(5’ - 3’) | Length of Primer |
|---|
| 1 | Beclin-1 | GGAGAGACCCAGGAGGAAGAG | 21 |
| 2 | Beclin-1 | GCCTCCCCAATCAGAGTGAAG | 21 |
| 3 | GAPDH | CTCTGCTCCTCCTGTTCGAC | 20 |
| 4 | GAPDH | TTAAAAGCAGCCCTGGTGAC | 20 |
3.4. Western Blotting
For western blotting, proteins in cell lysates were boiled for 5 minutes followed by resolving and separating onto a 10 - 15% SDS-PAGE. Furthermore, HEV239 proteins were transferred onto nitrocellulose membranes (Amersham, United Kingdom). Later, the membrane was blocked with a blocking buffer containing 5% skimmed milk plus 0.05% between 20 for 3 hours in RT. It was followed by immunoblotting with the primary monoclonal antibodies (mAb): anti-6X His tag mAb (dilution, 1:1000; Abcam, Cambridge, UK), or anti-beta actin antibody (Abcam, Cambridge, UK) over night at 4°C. After washing, the membranes were incubated with goat anti mouse immunoglobulin G-horseradish peroxidase secondary antibody (dilution, 1:5000; Santa Cruz Biotechnology) for 1 hour at RT. Ultimately, proteins were visualized using an enhanced chemiluminescence (ECL) purchased from Amersham company.
3.5. Immunization Protocol and Vaccine Preparation
Eight-week-old female BALB/c mice were purchased from the institute pasteur of Iran (Karaj, Iran). All animal experiments were performed in accordance with the confirmed animal protocols of the Institute Pasteur of Iran. Mice were assigned randomly into 5 groups (8 mice were used for each plasmid DNA vaccination): pVITRO-HEV239 alone, pVITRO-HEV239-Beclin-1, pVITRO-Beclin-1, only pVITRO empty vector, and PBS. The mice were injected by subcutaneous injection with 100 µg of naked plasmid DNA 3 times at days 0, 14, 21.
3.6. Anti-HEV239 Antibodies Detection
Two weeks after the final immunization, mice sera were collected and tested for anti-HEV239 antibodies detection by the ELISA method with purified recombinant HEV239 protein. Flat-bottom 96-well plates were incubated with 10 µg/mL of recombinant HEV239 protein overnight at 4°C. Then, coating solution was removed and individual serum samples were added to each of the coated wells in duplicates and then incubated for 2 hours at RT. After 3 washes with the washing buffer, goat anti-mouse IgG1, IgG2a, and total IgG (1:1,000 in PBS, Sigma, St. Louis, MO, USA) were added to each well and incubated for 30 minutes at room temperature. Next, rabbit anti-Goat IgG HRP conjugate (1:5,000 in washing buffer) was added after 3 washes and incubation was performed for 15 minutes. In order to determine a color reaction, peroxidase substrate was added and at the end of incubation time, the reaction was stopped with 3N NaOH. Finally, the optical density (OD) was calculated at 450 nm (Stat Fax 4200 Microplate Reader).
3.7. Cytokine Release and Lymphocyte Proliferation Assay
In order to assay lymphocyte proliferation, the mice were scarified 2 weeks after the final immunization and the spleens were removed. Cell proliferation ELISA, BrdU (5-bromo-2 deoxyuridine, Roche, Germany) kit was used to assay cell proliferation. Briefly spleen cells (1 × 106 cells/well) were cultured in RPMI1640 and stimulated on the presence of Ag HEV-239 (5 µg/mL) in 96-well flat-bottom plates and incubated for 72 hours at 37°C in 5% CO2. Concanavalin A (Con A) and un-stimulated cells were used for positive and negative controls, respectively. Then, 20 µL BrdU labeling solution was added per well and incubated for 12 hours at 37°C in a CO2 incubator. Finally, Brdu can be detected by anti-BrdU antibodies (Roche, Germany) and an analysis was performed according to the manufacturer’s instructions.
3.8. IFN-γ and IL-4 Enzyme-linked Immunospot (ELISPOT) Assay
The mouse IFN-γ ELISPOT and IL-4 ELISPOT assays were performed using commercial kits provided by MABTECH (Nacka Strand, Sweden), according to the manufacturer’s protocol. Briefly, 96-well ELISPOT plates were coated with 15 µg/mL anti-mouse IFN-γ or anti-mouse IL-4 and incubated overnight at 4 - 8°C. Next, the plates were washed 5 times with 200 µL sterile PBS/well and blocked with 200 µL/well of medium containing 10% of the same serum as used for the cell suspension. Splenocytes from vaccinated and control mice were added in duplicate (2 × 105 cells/well) with recombinant HEV239 protein and incubated at 37°C in the presence of 5% CO2 for 24 hours. Then, the wells were completely washed and incubated with biotinylated anti-mouse IFN-γ or anti-mouse IL-4 for 2 hours at RT. After washing, the wells were incubated with streptavidin-ALP for 1 hour at RT. Wells were washed again and substrate was added to the wells. Color development was monitored until distinct spots emerged and stopped by washing extensively with tap water. After drying overnight at RT, spots of activity were inspected by a dissection stereoscope (Leica microscopy system, Heerbrugg, Switzerland). Data were presented as an average number of spots per 2 × 105 cells ± SD.
3.9. Statistical Analysis
All results were introduced as mean ± standard deviation (SD). Comparisons between groups were conducted by one way ANOVA using GraphPad Prism version 6.00 for Windows, GraphPad Software, La Jolla California USA, www.graphpad.com”. Differences were considered significant at a P value less than 0.05.