1. Background
2. Objectives
3. Methods
3.1. Ethics Statement
3.2. Isolates
3.3. Detection of Salmonella spp. Using Triplex Polymerase Chain Reaction and Differentiation of S. enterica Serotype enteritidis from Other Salmonella spp.
3.3.1. Extraction of DNA
3.3.2. Triplex PCR Performance
3.4. Antibiotic Resistance Testing
3.5. Primer Design, PCR Amplification Conditions, and Detection of Virulence Genes
| Target Gene, Primer Name | Sequences (5' to 3') | Annealing Temperature (ºC) | PCR Product Size (bp) | Reference |
|---|---|---|---|---|
| sdiA | 53 | 274 | (23) | |
| sdiA-F | AATATCGCTTCGTACCAC | |||
| sdiA-R | GTAGGTAAACGAGGAGCAG | |||
| spvC | 53 | 571 | (23) | |
| spvC-F | ACTCCTTGCACAACCAAATGCGGA | |||
| spvC-R | TGTCTCTGCATTTCGCCACCATCA | |||
| ratA | 56 | 243 | (24) | |
| ratA-F | GACGTCGCTGCCGTCGTACC | |||
| ratA-R | TACAGCGAACATGCGGGCGG | |||
| lpfC | 64 | 641 | (3) | |
| lpfC-F | GCC CCG CCT GAA GCC TGT GTT GC | |||
| lpfC-R | AGG TCG CCG CTG TTT GAG GTT GGA TA | |||
| sitC | 60 | 768 | (3) | |
| sitC-F | CAG TAT GCT CAA CGC GAT GTC TCC | |||
| sitC-R | CGG GGC GAA AAT AAA GGC TGT GAT GAA C | |||
| sifA | 60 | 449 | (3) | |
| sifA-F | TTT GCC GAA CGC GCC CCC CAC AGC | |||
| sifA-R | GTT GCC TTT TCT TGC GCT TTC CAC CCA TCT | |||
| sopB | 60 | 220 | (3) | |
| sopB-F | CGG ACC GGC CAG CAA CAA AAC AAG AAG | |||
| sopB-R | TAG TGA TGC CCG TTA TGC GTG AGT GTA TT | |||
| spiA | 60 | 550 | (3) | |
| spiA-F | CCAGGGGTCGTTAGTGTATTGCGTGAGATG | |||
| spiA-R | CGCGTAACAAAGAACCCGTAGTGATGGATT | |||
| sipA | 60 | 875 | (3) | |
| sip A-F | GGACGCCGCCCGGGAAAAACTCTC | |||
| sip A-R | ACACTCCCGTCGCCGCCTTCACAA | |||
| hilA | 52 | 497 | (25) | |
| hilA2-up | CTG CCG CAG TGT TAA GGA TA | |||
| hilA2-down | CTG TCG CCT TAA TCG CAT GT | |||
| invA | 58 | 796 | (26) | |
| invA-F | CGG TGG TTT TAA GCG TAC TCT T | |||
| invA-R | CGA ATA TGC TCC ACA AGG TTA | |||
| invA | 60 | 199 | (26) | |
| AAA CGT TGA AAA ACT GAG GA | ||||
| TCG TCA TTC CAT TAC CTA CC |
3.6. Biofilm Formation
3.7. Statistical Analysis of Data
| Sample (%) | Antibiotic | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fox | AM | Aug | C | IMI | MEM | ATM | CIP | CAZ | CAZ+ Clav | CRO | CPM | ETP | P | AM | FM | LVX | GM | K | CO | T | NA | |
| Human | 47.1 | 20.6 | 14.7 | 35.3 | 14.7 | 2.9 | 2.9 | 23.5 | 2.9 | - | - | - | - | 94.1 | 14.7 | 50 | - | 11.8 | 47.1 | 91.2 | 91.2 | 88.2 |
| Chicken | 7.1 | - | - | 42.9 | - | - | - | 64.3 | 7.1 | - | 7.1 | 7.1 | - | 100 | - | 92.9 | 7.1 | 42.9 | 50 | 50 | 14.3 | 78.6 |
| Poultry | - | - | - | 5.9 | - | - | - | 11.8 | 5.9 | - | - | - | - | 70.6 | AM | 17.6 | - | - | - | - | - | 94.1 |
Abbreviations: Fox, cefoxitine; A, amoxicillin; ATM, aztreonam; Aug, augmentin; C, colistin; CAZ, ceftazidime; Clav, clavelanic acid; CO, chloramphenicol; CPM, cefepime; IM, imipenem; MEM, meropenem; CIP, ciprofloxacin; CRO, ceftriaxone; EP, ertapenem; K, kanamycin; NA, nalidixic Acid; Ne, neomycin; P, penicillin; TMP/SMX, trimethoprim/sulfamethoxazole; T/S, trimethoprim-sulfamethoxazole.
4. Results
4.1. Identification of Salmonella enterica Serotype enteritidis
4.2. Results of the Analysis of Virulence Genes in Salmonella enterica Serotype enteritidis
Virulence genes detection by multiplex PCR. Lane 1: marker 100 bp; lanes 2 and 3: invA (780 bp); lanes 4, 8, and 17: negative control; lanes 5, 6, and 7: pag (454 bp), cdtB (268 bp), and msgA (189 bp); lanes 9 and 10: ipfC (641 bp), span (504 bp), and tolC (161 bp); lanes 11, 12, and 13: sitC (768 bp), sifA (449 bp), and sopB (220 bp); lanes 14, 15, and 16: sipA (875 bp) and spiA (550 bp); lanes 18 and 19: hilA (497 bp), lane 20: marker 50 bp.
4.3. Results of Susceptibility Testing
The total results of antibiotic resistance in live poultry, human, and chicken meat. A, Amoxicillin; C, colistin; CAZ, ceftazidime; CIP, ciprofloxacin; CO, chloramphenicol; CPM, cefepime; CRO, ceftriaxone; EP, ertapenem; FM, framycetin; Fox, cefoxitine; GM, gentamicin; IM, imipenem; K, kanamycin; KF, cefalotine; LVX, levofloxacin; MEM, meropenem; NA, nalidixic acid; NIT, nitrofurantoin; P, penicillin; TMP/SMX, trimethoprim/sulfamethoxazole; T/S, trimethoprim-sulfamethoxazole.
4.4. Results of Biofilm Formation
| Antibiotic | Sensitive (%) | Intermediate (%) | Resistant (%) | P Value |
|---|---|---|---|---|
| Fox | 64.6 ± 0.07 | 9.2 ± 1.14 | 26.2 ± 3.29 | 0.075 |
| A | 81.5 ± 2.1 | 7.6 ± 0.11 | 10.7 ± 1.2 | 0.174 |
| C | 44.1 ± 0.111 | 26.1 ± 0.06 | 29.2 ± 0.111 | 0.02 |
| IM | 81.5 ± 4.5 | 10.8 ± 0.08 | 7.7 ± 1.3 | 0.174 |
| MEM | 98.4 ± 5.7 | 0 ± 0.01 | 1.6 ± 0.67 | 0.674 |
| CIP | 0 ± 0.01 | 70.7 ± 4.2 | 29.3 ± 2.34 | 0.138 |
| CAZ | 90.7 ± 4.56 | 4.6 ± 0.06 | 4.6 ± 0.06 | 0.04 |
| CRO | 98.4 ± 3.23 | 0 ± 0.001 | 1.6 ± 0.95 | 0.24 |
| CPM | 96.9 ± 3.1 | 1.5 ± 0.08 | 1.5 ± 0.21 | 0.214 |
| P | 9.2 ± 0.08 | 1.1 ± 0.5 | 89.2 ± 3.1 | 0.001 |
| FM | 32.3 ± 2.3 | 16.9 ± 3.32 | 50.7 ± 3.76 | 0.537 |
| AM | 76.9 ± 0.07 | 4.6 ± 0.9 | 18.4 ± 0.07 | 0.966 |
| LVX | 98.4 ± 5.6 | 0 ± 0.001 | 1.6 ± 1.1 | 0.24 |
| GM | 60 ± 3.7 | 24.6 ± 2.1 | 15.4 ± 1.3 | 0.04 |
| NA | 1.5 ± 02.1 | 10.7 ± 1.32 | 87.6 ± 3.33 | 0.602 |
| TMP/SMX | 49.2 ± 0.95 | 0 ± 0.01 | 50.8 ± 2.13 | 0.001 |
| Co | 41.5 ± 0.06 | 0 ± 0.002 | 58.5 ± 3.89 | 0.001 |
| ATM | 98.4 ± 4.1 | 0 ± 0.01 | 1.6 ± 0.11 | 0.674 |
| EP | 98.4 ± 1.14 | 0 ± 0.02 | 1.60 ± 1.11 | 0.674 |
| T | 49.2 ± 0.06 | 0 ± 0.002 | 50 ± 5.1 | 0.001 |
Abbreviations: Fox, cefoxitine; A, amoxicillin; C, colistin; CAZ, ceftazidime; CIP, ciprofloxacin; CO, chloramphenicol; CPM, cefepime; CRO, ciprofloxacin; EP, ertapenem; FM, framycetin; GM, gentamicin; IM, imipenem; MEM, meropenem; NA, nalidixic acid; P, penicillin; TMP/SMX, trimethoprim/sulfamethoxazole; T/S, trimethoprim-sulfamethoxazole.


