The current study compared nephrotoxic effect of gentamicin and amikacin. It was concluded that based on the current study, the nephrotoxic effect of gentamicin and amikacin were equal and there were not aesthetic preferences for these drugs. Bajracharya et al. in a study compared nephrotoxic effect of amikacin and gentamicin throughout creatinine clearance test, in post-operative patients with normal renal function. They found that although the dose of administered gentamicin is much lower than amikacin, gentamicin has a greater nephrotoxic effect (
9), but this study found that nephrotoxic effect of these drugs were equal in the 2 groups. Sweileh et al. in their study investigated the nephrotoxic effect of gentamicin and amikacin. They evaluate 94 children in 2 groups of gentamicin (45 children) and amikacin (49 children). They found that amikacin was significantly less nephrotoxic than gentamicin and that multiple dosing of gentamicin was more nephrotoxic than single dosing, yet the nephrotoxic effect of amikacin was not significantly dependent on frequency of dosing (
10); the current study did not confirm these results. Also, Dayan et al. in a study found that nephrotoxic effect were reduced by reduction in frequency of aminoglycosides consumption (
11); this factor was not evaluated in the current study. Sassen et al. in a study, evaluated the effect of gentamicin on dysregulation of renal sodium transporters in rats. They found that the fraction excretion of electrolytes was significantly increased in 7 days of treatment with gentamicin (
12). Takamoto et al. in a study on the effect of antibiotics on glucose absorption in the kidneys, found that glucose absorption in proximal tubule of kidneys were reduced in children with consumption of gentamicin (
13). Akbari et al. in a study investigated the effect of anti-biotherapy on renal function. They evaluated 142 patients and found that GFR contributed to renal function and it was reduced in children treated by antibiotics (
14), which is similar to the current findings. Also, Wolf et al. in their study found that impaired renal function was higher in infections of diabetic foot (
15). Pannell et al. in a study evaluated nephrotoxic effect of gentamicin and found that gentamicin had some complications on kidneys (
16). Roger et al. in a study evaluated the impact of amikacin and gentamicin on the serum concentrations. They conducted this on 63 ICU patients with severe sepsis. Also, these drugs increased peak serum concentrations in 59% of patients (
17). Sonia et al. conducted a study on neonates and evaluated fractional excretion of Magnesium, as a marker of nephrotoxicity induced by aminoglycoside, and found that FE of Mg could be considered as a biomarker of tubular damage and nephrotoxicity effect of aminoglycoside therapy could be detected by this marker (
18). Therefore, all of the mentioned studies found the nephrotoxicity effect of gentamicin and amikacin and the difference of their complications, yet the current study did not find this difference in nephrotoxicity effect of drugs. The limitation of this study was the lack of cooperation of parents in the study, however after the importance of antibiotherapy on renal function was explained to them, they were convinced. Based on a few clinical studies that have been carried out regarding the nephrotoxic effect of aminoglycoside in children, further studies are required with greater number of cases for evaluation of antibiotic side effects.