An artificial neural network (ANN) as a nonparametric method is applied in the medical field based on input variables to classify individuals as patient or healthy, and predict their situation based on danger factors (
1). The history of neural networks (NNs) dates back to the mid-20th century. At first they may seem complicated, but they can be easily merged with a medical environment (
2). Today, due to the development of knowledge in the medical field as well as complexity of the decisions related to diagnosis and treatment, specialists pay due attention to smart tools and decision support systems in medical issues. In addition, the use of different kinds of smart systems in medicine is increasing (
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4). These tools and systems can decrease the potential errors that may arise due to the medical specialist’s tiredness or their inexperience in the diagnosis and treatment of diseases. In addition, using these systems, the medical database can be analyzed in much less time and in more details (
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5). For this purpose, the models with minimum errors and maximum confidence should be used. Ozden et al., in a study entitled “periodontal disease diagnosis using classification algorithms”, found that the decision tree and supporting vector machine with high precision were suitable to classify periodontal diseases (
6). A study conducted by Kositbowornhcahi et al., on the NN function to diagnose vertical fracture of tooth root, revealed that the NN designed for their research had high insensitivity, accuracy, and verity in the diagnosis of vertical tooth root (
7). In a study entitled “the multi-layer perceptron NN to diagnose proximal plaque”, Devito et al., reported 39.5% improvement in diagnosis (
8). Martina et al., showed that NNs can be used as an important tool to improve the medical behaviors and maximize the profit of treatment costs (
9). In a study entitled “estimation of dental ceramics chemical resistance using NN”, in another study, reported that ANN had high potential as an additional method to investigate the properties of dental materials (
9). The study by Amiri et al., entitled “determining the effect of qualitative and quantitative prediction of survival of patients with gastric cancer using hierarchical NN models” concluded that compared with the Cox model, NNs can accurately anticipate the probability of survival of patients with gastric cancer (
10). Shankarapillai et al., showed that NN trained by Levenberg-Marquardet (LM) algorithm can be used effectively to diagnose the risk of periodontal diseases (
11). Moghimi et al., conducted a study entitled “designing and using a combination of genetic algorithm and ANN to anticipate the size of hidden canines and premolar size”, and found that the proposed method was an efficient tool to anticipate the size of hidden canines and premolar with high accuracy in comparison with regression analysis (
12). According to the mentioned studies, it can be said that the unique capability of ANNs to differentiate, categorize, and diagnose diseases can be efficient and useful (
13). Periodontitis is a common inflammatory disease (
14) in humans, and its main cause is long-term bacterial infection (
15). Research on the pathobiology of periodontal diseases increases the knowledge about this disease (
16). Each ANN is made of input, hidden, and output layers. There are some processing elements (neurons and nodes) in each layer. An NN is a set of processors in which each processor is associated with the processor in the next layer. The relationship between the network layers are possible according to the weight coefficients and bias of each processor, as well as the threshold and transfer functions. Finally, the network output can be regarded as the simulated value resulting from the training network. While training the network, it is necessary to minimize the network’s simulation error by choosing a suitable learning algorithm. In the back propagation error method, the main goal is to reduce the network error rate (
17). The current study used multilayer feed forward NN with two different train algorithms (LM and scaled conjugate gradient (SCG) algorithms) and three major factors of the disease diagnosis (probing pocket depth, clinical attachment loss, and plaque index) to diagnose the periodontal diseases. Then, the results of the two algorithms were compared in terms of error rate and number of iterations.