The APOC3 protein is a component of triglyceride-rich lipoproteins, which inhibits lipoprotein lipase, which in turn hydrolyses triglycerides to generate free fatty acids before their uptake by muscle and adipose tissue, resulting in increased plasma triglyceride concentrations (
20-
22). Common mutations in the APOC3 promoter (-455T > C and -482C > T) have been associated with higher plasma triglycerides. These single nucleotide polymorphisms (SNPs) are located within an insulin responsive element in the APOC3 promoter and result in overexpression of APOC3 due to attenuated suppression by insulin. Numerous studies have reported associations of gene polymorphisms of APOC3 and higher plasma triglycerides (
23). Whereas the physiological role and biological function of APOC3 in the liver are still unclear, we analyzed published evidence investigating the association between gene polymorphisms of APOC3 and NAFLD. Our primary purpose was to assess the effect of gene polymorphisms of APOC3 as a risk factor for developing NAFLD in different populations. To our knowledge, this was the first published meta-analysis to comprehensively investigate the association between gene polymorphisms of APOC3 and NAFLD. Studies concerning this possible association have been undertaken since 2010 (
8). Asian-Indian men carrying at least one of the minor alleles of the rs3854116 (-455T > C) or the rs2854117 (-482C > T) SNPs in the APOC3 had higher liver fat content than homozygous carriers of both major alleles (
8). In the same study, similar findings were observed for non-Asian Indian men. These data suggested that APOC3 may also be involved in the pathogenesis of fatty liver (
8). In contrast, in a large study including three populations, SNPs were not associated with liver fat content (
24). These contradictory findings necessitate further investigations on gene–environmental and gene-gene interactions of this genotype to determine hepatic steatosis (
25). The summary OR for the association of gene polymorphisms of APOC3 and the risk of NAFLD was estimated as 1.03 with a 95% CI from 0.87 to 1.21. In our study, only English or Chinese publications were included in the analysis. A ‘Meta-analytical’ research on 29 meta-analyses investigating language bias provided evidence that OR values estimated in meta-analyses from non-English publications were on average 0.8-fold (95% CI, 0.7-1.0) of OR estimates from English-written publications (
26). Therefore, even if we had not searched for non-English publications, this might have introduced only a small bias in the overall findings. Therefore, our language methodology is unlikely to have altered our main conclusions. However, the shape of the funnel plot seemed to be asymmetrical, suggesting that publication bias might have affected our findings. Several other points should be considered when interpreting the results of our study. First, three methods were used to detect liver fat content. Two studies (
14,
18) performed a liver biopsy and the others used H-MRS (
8,
16,
17) or ultrasound (
15,
19). This may have introduced some heterogeneity in the diagnosis of NAFLD. Histology with standard staining, despite the possibility of false negative results, may be more precise than H-MRS and ultrasound and remains to be the reference method until present. However, most published data were based on H-MRS or ultrasound rather than liver biopsy. Secondly, because the information used in our research was based on data from observational studies, characteristics of each study population and different methodologies of these studies should be taken into account when interpreting the results of our analysis. For example, different inclusion criteria for selection of participants might have influenced the results of this research. In our study, only adults were included, whereas Valenti et al. (
14) studied adults and children. Five studies (
8,
14,
16,
17,
19) considered the proportion of women, while the other two studies (
15,
18) did not consider gender ratio. Differences in age distribution, gender ratio and ethnicity could also be potential causes of variation in the study estimates. We also analyzed the ethnicity. Four studies (
14,
15,
17,
18) reported subgroup analyses for Caucasians, but other ethnicities in selected researches were too little to perform subgroup analysis. Subgroup analyses about ethnicity suggested that gene polymorphisms of APOC3 were not a risk factor of NAFLD in Caucasians. Additionally, we tried to maximize our efforts to identify all relevant published studies in peer-reviewed journals, but it is possible to miss some. In conclusion, our analysis showed no association between gene polymorphisms of APOC3 and the risk of NAFLD. There may have been indications of possible publication bias and some heterogeneity in the methods used for assessing hepatic steatosis, with less pronounced associations in prospective studies than retrospective ones. Homogeneity of the methods for evaluating the degree of steatosis, common gender, age and ethnicity would be critical to confirm the absence of association and therefore lack of causal role of gene polymorphisms of APOC3 in patients with NAFLD. Given the importance of this issue, further prospective rigorous studies are warranted. Although, genetic predisposition to NAFLD may not be detectable until considering all other factors.