Although hepatitis C virus was discovered in 1989, efforts for the development of an effective prophylactic vaccine is ongoing. Nevertheless, the design of a vaccine that can induce a protective immunity remains a major challenge. Basically, an ideal vaccine should be capable of eliciting strong humoral and cellular immune responses (
21). Among different vaccination strategies, DNA vaccines for their stability, safety, and ease of production provide a reliable approach for vaccine development (
22). Although DNA vaccines can elicit both humoral and cellular immune responses, their immunogenicity is limited.
In silico design and analysis of employed molecule’s properties and interactions by bioinformatics tools (
9), and also simple manipulation in molecular cloning provide a desirable opportunity for improving DNA vaccines potency. In this study, we designed and generated a DNA vaccine, pcDNA-E2-NT(gp96), that encodes a fusion protein, including HCV E2 ectodomain and N-terminal domain of gp96. Two parts are fused with a flexible linker, which also provides restriction enzyme sites for molecular cloning without adding extra amino acid to the protein sequences. For this aim, we designed and fused N-terminal domain of gp96 as a biological adjuvant to N-terminal or C-terminal of HCV E2 ectodomain and produced NT(gp96)-E2 and E2-NT(gp96) fusion proteins, respectively. Then two fusion proteins were analyzed by bioinformatics tools to choose the best form for vaccine generation.
Moreover, 3D modeling of fusion proteins by
I-TASSER showed that E2-NT(gp96) has better quality than NT(gp96)-E2. Local structure quality estimation showed that the residues’ charge in two forms are largely negative and stable in terms of structures. However, the estimated global accuracy of the best models of two variants indicated that E2-NT(gp96) form has correct global topology, and also it has higher confidence than NT(gp96)-E2. The evaluation of the accuracy and reliability of the predicted 3D model was done by ProSa-web. The overall quality calculated score (Z-score) of input structure is displayed in a plot that shows the scores of all experimentally determined protein chain currently available in the Protein Data Bank (PDB) (
16). As shown in
Figure 2A, Z-score (-3.33) of the best-predicted model structure is close to the range of scores typically found for proteins of the similar size. The evaluation of the interaction between ligand-receptor by docking is a useful method for verifying the accuracy of structural modeling. Docking is a method that predicts the conformation and orientation of the ligand at the binding site of the receptor. The association strength of the molecules is expressed by the free energy of binding (
23). Free energy of the fusion protein docking to the CD81 (-818.75 kJ/mol) showed that the E2-NT(gp96) had a high tendency to interact with CD81. The highly binding affinity of E2-NT(gp96) to the CD81 receptor indicated that E2 has retained its conformation in the fusion with NT(gp96), and also fusion protein modeling was done correctly. Total results indicated that the predicted model is acceptable.
Bioinformatics analysis demonstrated that E2-NT(gp96) fusion protein had convenient features for vaccine designing. Therefore, we cloned target genes into pcDNA3.1(+) and constructed pcDNA-E2-NT(gp96) plasmid. Generated DNA vaccine potential immunogenicity was evaluated in BALB/c mice. The results of the ELISA for HCVgpE2-specific IgG measurement on sera of the immunized mice showed that the constructed vaccine induced high titer of specific antibodies. Our results are consistent with Sun and coworkers study, which they reported that immunization with pcDNA3.1 plasmids encoding E2 protein or E2-Fc fusion protein could elicit specific antibody responses in BALB/c mice (
24). In another study, Deng and colleagues generated a DNA vaccine (pVRC-CE1E2) and injected into BALB/c mice. Unlike our vaccine, pVRC-CE1E2 failed to induce detectable antibody responses in immunized animals (
25). The levels of isotypes (IgG1 and IgG2a) and IgG2a/IgG1 ratio showed that unexpectedly, our DNA vaccine elicited a mixed Th1 and Th2 but predominant Th2 responses. This may be due to the injection route, dose and the method of injection (
26). Previous works have demonstrated that footpad administration induced stronger Th1 response than the intramuscular route we used (
27,
28).
The importance of neutralizing antibodies (NAbs) in the prevention of chronic HCV infection progression is well-known (
5). Thus an ideal HCV vaccine should be able to induce potent neutralizing antibody responses. As shown in
Figure 6, sera of immunized mice by pcDNA-E2-NT(gp96) cross-neutralized infectivity of the HCVcc strain (genotype 2a) by 55%. Previous studies have shown that the HCV E2 glycoprotein is the main target of the neutralizing antibodies (
5). Accordingly, E2 immunogenicity largely depends on its proper conformation (
29). On the other hand, NAbs most often recognize tertiary or quaternary structures (
30). Therefore, a vaccine platform designed to induce NAbs requires expressing the target protein in the correct three-dimensional conformation. Induction of cross-neutralizing antibodies by constructed DNA vaccine indicates that the E2 protein in the E2-NT(gp96) fusion form has presented in proper conformation to the immune system. This shows that the fusion of E2 protein to the NT(gp96) by flexible linker retains its conformation. NT(gp96) as intracellular molecular chaperone plays an important role in the folding and processing of proteins. Moreover, studies have demonstrated that gp96 or its N-terminal domain activates macrophages and dendritic cells through interaction with Toll-like receptors (TLRs) and the induction of pro-inflammatory cytokines. It also activates specific T cells by cross-presentation of peptides to MHC class I and class II molecules (
31). Therefore, gp96 as a genetic adjuvant creates a potent humoral and cellular immune responses by conferring antigen presentation by both MHC-I and MHC-II.
In summary, we designed and generated a DNA vaccine (pcDNA-E2-NT(gp96)) that induced potent cross-neutralizing Abs in immunized mice. Our results showed that this recombinant plasmid might be a promising candidate vaccine against HCV infection. However, the effectiveness of the vaccine was only tested for humoral immune responses, so additional work needs to be performed for its capacity in cellular immunity induction.