1. Background
2. Objectives
3. Patients and Methods
3.1. Participants
3.2. Genotype Analysis
| Gene (SNP) | Location (Base Change) | Forward Primer Reverse Primer | PCR Program (35 Cycles) | PCR Fragment Size (Bp) | Restriction Enzyme, Incubation Temperature | Alleles: RFLP Fragments Size (Bp) |
|---|---|---|---|---|---|---|
| Promoter (G > A) | 5' - TTTCCTGTAATT TTCCCGTGAG-3' 5' - AAAGCAAAGACA GGCATAAAAA-3' | 93 ºC 45s, 61 ºC 30s, 72 ºC 35s | 242 | HhaI, 37 ºC | Allele A: 242 Allele G: 181 + 61 | |
| Exon 6 (A > G) | 5'-AAACTCAACGA CACTCTCCTT-3' 5'-TGAACTGACATT AGAGGTGAC-3' | 93 ºC 45s,57 ºC 30s, 72 ºC 30s | 80 | MspI, 37 ºC | Allele A: 80 Allele G: 59 + 21 |
3.3. Statistical Methods
4. Results
4.1. Clinicopathological Analysis
| Variables | Controls (N = 339) | Cases (N = 261) | P Value |
|---|---|---|---|
| 44.3 (16.3) | 56.1 (12.6) | < 0.001 | |
| 25.2 (4.2) | 25.6 (4.9) | 0.261 | |
| Men | 164 (48.4) | 146 (55.9) | |
| Women | 175 (51.6) | 115 (44.1) | 0.066 |
| No | 290 (85.5) | 214 (82.0) | |
| Former | 39 (11.5) | 32 (12.3) | |
| Current | 10 (3.0) | 15 (5.7) | 0.261 |
| No | 270 (79.6) | 248 (95.0) | |
| Yes | 69 (20.4) | 13 (5.0) | < 0.001 |
| No | 303 (89.4) | 229 (87.7) | |
| Yes | 36 (10.6) | 32 (12.3) | 0.530 |
| Colon | - | 167 (63.9) | |
| Rectal | - | 94 (36.1) | - |
| No | - | 176 (89.3) | |
| Yes | - | 21 (10.7) | - |
aVariables presented as mean (SD) or number (%).
4.2. LEP and LEPR SNPS Analysis
| Gene (Variant) | Controls (N = 339) | Cases (N = 261) | Or (95% Ci) P Value |
|---|---|---|---|
| AA | 113 (33.3) | 76 (29.1) | 1.0 (reference) |
| AG | 154 (45.4) | 135 (51.7) | 1.44 (0.96 - 2.15) 0.076 |
| GG | 72 (21.3) | 50 (19.2) | 1.07 (0.65 - 1.77) 0.791 |
| AG and GG | 226 (66.7) | 185 (70.9) | 1.32 (0.90 - 1.92) 0.152 |
| GG versus others | 72 (21.2) | 50 (19.2) | 0.86 (0.56 - 1.33) 0.497 |
| A | 380 (56.0) | 287 (55.0) | 1.0 (reference) |
| G | 298 (44.0) | 235 (45.0) | 0.96 (0.76 - 1.21) 0.712 |
| AA | 146 (43.1) | 127 (48.7) | 1.0 (reference) |
| AG | 147 (43.3) | 101 (38.7) | 0.76 (0.52 - 1.10) 0.141 |
| GG | 46 (13.6) | 33 (12.6) | 0.75 (0.44 - 1.27) 0.305 |
| AG and GG | 193 (56.9) | 134 (51.3) | 0.75 (0.53 - 1.07) 0.114 |
| GG versus others | 46 (13.6) | 33 (12.6) | 0.86 (0.51 - 1.44) 0.564 |
| A | 439 (64.7) | 355 (68.0) | 1.0 (reference) |
| G | 239 (35.3) | 167 (32.0) | 0.87 (0.68 - 1.10) 0.237 |
aVariables presented as number (%).
bAdjusted for age, BMI, sex, smoking status, NSAID use, and family history in genotype-wise comparisons.