Optimization and Molecular Detection of Neuraminidase Gene in Listeria monocytogenes

2.1. Bacterial Growth Conditions and Maintenance

Five isolates of L. monocytogenes were obtained from raw milk samples (n = 120) of cow. One millilitre of milk sample was serially diluted and plated on Listeria enrichment agar (Himedia Laboratories, LLC) and incubated at 37°C for 18 hours. A single colony with greenish-blue coloration was selected and inoculated in selective broth containing cycloheximide and nalidixic acid for further experiments (12). Nutrient agar slants were prepared and the selected strain was streaked, and before storing at 4°C, they were allowed to grow at 37°C for 18 to 24 hours.

2.2. Microbiological, Biochemical and Molecular Identification of L. monocytogenes

The selected isolates were microscopically examined and subjected to conventional biochemical tests, which include, gram-staining, catalase, oxidase, and β-hemolysis. Furthermore, carbohydrate fermentation test was performed with different sugars, such as sucrose, mannitol, rhamnose, maltose, inositol, xylose, fructose, and lactose, as described previously by Janzten et al. (13). The molecular detection of L. monocytogenes was performed by using hemolysin gene (hlyA) species-specific primers. The bacterial genomic DNA from the native L. monocytogenes and ATCC 19155 was extracted using the Quick-g DNATM miniprep kit (Zymo Research, SA). The protocol for the isolation of the genomic DNA was performed as described by the manufacturer. The hlyA gene was amplified by using the primers F-5’CGGAGGTTCCGCAAAAGATG3’ and R-5’CCTCCAGAGTGATCGATGTT3’. The PCR was performed as described by Khan et al. (14), and an amplicon size of 234 bp was considered as a positive result.

2.3. Detection of Sialidase Gene

Different sialidase genes were retrieved from NCBI database and BLAST (Basic Alignment Search Tool) search. The homologous gene was identified in the genome of L. monocytogenes. Multiple alignments of SA gene was performed by the ClustalX program. Primers were designed to amplify the sialidase gene among L. monocytogenes. The following PCR conditions were used to obtain a product size of 432 bp with the primer pair, SA-F5’GGCTTCAGGCTATTA3’ and SA-R5’GTTTTCCACGTC TTC3’. The PCR reaction was carried out with 1X PCR buffer, 200 µM dNTP mix, 10 pmol of each primer, 2 mM of MgCl₂, and 1U of Taq DNA polymerase (Sigma Aldrich, USA) in a 25-µL reaction volume. The PCR program was performed with the following thermal conditions: 95°C for five minutes, followed by 35 cycles at 95°C for 30 seconds, 58°C for one minute, 72°C for one minute, and a final extension at 72°C for 10 minutes. The obtained amplicons were run at 1% ethidium bromide stained agarose gel and a product size of 432 bp was obtained. The amplicon was purified by gel purification kit (Qiagen, Germany) and subjected to sequencing by sanger’s method. The BLAST search analysis of the obtained nucleotide sequence data showed 98% homology to L. monocytogenes.

2.4. Sialidase Protein Purification and Estimation

The sialidase purification was performed from native isolates by using the ammonium sulphate saturation method. The L. monocytogenes was grown in Listeria enrichment broth for 24 hours at 37°C under 200 rpm shaking conditions. Later on, the cell-free supernatant was collected and was saturated with ammonium sulphate. The obtained precipitate was subjected to dialysis against 10 mM Tris-HCl buffer (pH 7.4) at 4°C. The dialyzed sample was loaded on to ion-exchange chromatography on DEAE cellulose (Whatman, England). The fractions were collected (2 mL each) and the sialidase activity was determined in each sample. The active fraction was stored by lyophilization. The obtained protein was estimated by the Bradford method, as described previously (15).

2.5. Monitoring the Release of Sialidase Gene in L. monocytogenes

The release of trans-sialidase gene was monitored by growing L. monocytogenes in the culture medium containing 4-methylumbelliferyl α-d-acetylneuraminic acid (MU-NANA) (a substrate), as described previously (16). Samples were aliquoted every 10 minutes for one hour. The amount of sialidase released was monitored through UV spectrophotometer at 360 nm wavelength. Briefly, 50 μL of sample, 50 μL of MU-NANA (1 mg/mL) was added to 100 μL of 0.1 M phosphate buffer (pH 6.5). The reaction mixture was allowed to react and incubated for one hour at room temperature. The reaction was stopped by adding 100 μL of 0.2 M borate buffer (pH 9.0). The absorbance was determined at 360 nm wavelength in UV spectrophotometer. One unit of enzyme activity was defined as “the amount of enzyme, which produced 1 μmole of N-acetylneuraminic acid per minute under the described assay condition”.

2.6. Optimization of pH and Temperature of Trans-Sialidase

To determine the optimal pH, the reaction was carried out using 4-methylumbelliferyl α-d-acetylneuraminic acid (MU-NANA), as a substrate with selected buffers such as 0.1 M of sodium phosphate buffer (pH 3.0, 4.0, 5.0 and 6.0) and acetate buffer (7.0, 8.0, 9.0 and 10.0). The reaction was carried out at 37°C for one hour and was terminated by using a stop buffer (0.2 M borate). The absorbance was taken at 360 nm against the substrate blank and sterile distilled water was added instead of MU-NANA.

For temperature effect, the reaction was carried out at 20, 30, 40, 50, 60, 70 and 80°C against 4-methylumbelliferyl α-d-acetylneuraminic acid (MU-NANA), using optimum pH of four. The sample mixture was incubated for one hour at the selected temperatures and the reading was noted at 360 nm after stopping the reaction with 0.2 M borate.

2.7. Effect of Metal Ions and Surfactants on Trans-Sialidase Enzyme

The effect of metal ions on trans-SA was measured by using 5 mg of purified protein in 20 mM of Tris-buffer pH 8.0, and 2.5 mM of Ca⁺², Mg⁺², Ag⁺², Mn⁺², Hg⁺², Al⁺³, and Zn⁺². Enzyme activity in the absence of metal ions was used as a control and assayed under standard conditions. The metal chelating agents, such as sodium lauryl sulphate (SDS), and surfactants, such as Tween 20, 40, and 60 were used at a concentration of 0.5% on the partially purified sialidase enzyme. The experiment was performed in triplicates and mean percentage was calculated.

3.1. Screening for Listeria sp. from Raw Milk Samples

Food safety and quality are of prime importance and the detection of foodborne pathogens, especially Listeria, is a fundamental objective of the current study. In the current analysis, 4.16% of raw milk was found to be contaminated with Listeria species. A total of five L. monocytogenes were isolated and confirmed with their biochemical and morphological characteristics. The selected isolates were found to be Gram-positive rods, catalase positive, and oxidase negative. These isolates were able to produce acid and no gas on fermentation with carbohydrates, such as xylose, rhamnose, lactose, and maltose. None of the strains were able to ferment mannitol and inositol. On sheep blood agar, the selected isolates showed strong β-hemolytic activity. The prevalence of Listeria contamination was noted in ready-to-eat foodstuffs of Austria. Furthermore, it was observed that 19.4%, 5.5%, and 6.3% of seafood, soft cheese, and meat sausages were contaminated with different species of Listeria (17). Similarly, 21.2% of raw milk samples were found contaminated with Listeria sp., which were isolated form Turkey (18).

The hlyA PCR analysis for the five L. monocytogenes gave a positive amplicon of 234 bp, including positive control i.e., ATCC 19155, indicating the detection of L. monocytogenes (Figure 1). The detection of L. monocytogenes by hlyA specific primers from food sources has been used as a basic method by many research groups (14, 19). The current results are in correlation with already reported data and suggest the prevalence of L. monocytogenes in raw milk samples of cow. In this study, from 220 milk samples, five positive L. monocytogenes were detected, and PCR was able to detect all five cases. In other words, in all five cases, the hlyA gene was located on bacterial DNA.

Figure 1.

PCR detection of hlyA gene among Listeria monocytogenes *lane 1: 1000 bp DNA ladder; lane 2- L. monocytogenes ATCC 19155; lane 3-7: L. monocytogenes isolate L-123, L-14, L-187, L-44, L-88

3.2. Screening and Detection of Neuraminidase Gene from L. monocytogenes

It has been reported that several virulence genes such as hlyA, inlA, iap, etc. are the main cause of pathogenesis in L. monocytogenes strains. However, the microbial pathogenesis in some of the pathogens has also been deduced by the presence of neuraminidase enzymes (10). In the current study, the NA-producing L. monocytogenes were screened, and had the ability to cleave sialic acid. The specific primers designed for NA gene were amplified in five isolates of L. monocytogenes (Figure 2) and product size of around 432 bp was obtained. Many reports suggested that sialidase activity or neuraminidase activity play a crucial role in infection and inflammation in the host (9). The NA activity was detected in four isolates (Table 1).

Figure 2.

Detection of neuraminidase gene among isolates of Listeria monocytogenes *lane 1: 1000 bp DNA molecular ladder; lane 2: ATCC 19155; lane 3: L. monocytogenes L-123; lane 4: L-14; lane 5: L-187; lane 6: L-44; lane 7: L-88

The isolate L-14 of L. monocytogenes possessed 32 U/mL of high activity after 48 hours of incubation with the substrate. The current work establishes the presence of NA gene in L. monocytogenes. Warwas et al. (20) has noted the presence of NA gene through PCR-based detection in Clostridium chauvoei. Similarly, trans-sialidase has been identified in Trypanosoma cruzi by designing specific primers for NA gene (21).

3.3. Characterization of Sialidase Enzyme in L. monocytogenes

The sialidase enzyme was partially purified from native isolate L-14 of L. monocytogenes and a molecular mass of 27.0+/- 1 kDa was noted on native SDS-PAGE, with an isoelectric point of 7.6 (Figure 3). The isoelectric point of the enzyme was around 7.6 in the native isolate. The optimum temperature for the enzyme activity was found to be at 30 to 35°C (Figure 4). The activity was reduced after 50°C, suggesting its heat liable nature. Similarly, the optimum pH range of SA enzyme was 5.4 to 8.2 for 32 hours (Figure 5). It was described previously that bacterial sialidases optimal temperature was in the range of 35 to 40°C (22). In Vibrio cholerae non-O1 and Arcanobacterium pyrogenes the neuraminidase enzyme was found to be thermo-tolerant and was found to be stable up to 55 to 60°C (23, 24). The optimal pH in V. cholerae non-O1 was 5.4, however, the SA was found to be stable at pH 8.2 (24). The sialidase enzyme was found to be quite diverse and different molecular mass was observed. In Aspergillus fumigatus, the extracellular sialidase enzyme mass was around 42 kDa (25).

Figure 3.

Native SDS PAGE of partially purified sialidase enzyme in L. monocytogenes *lane 1: protein marker; lane 2: L. monocytogenes isolate L-14

Figure 4.

Effect of temperature of the purified sialidase enzyme

Figure 5.

Effect of pH of the purified sialidase enzyme

The effect of metal ions on SA enzyme was assessed and it was observed that Hg⁺² and Al⁺³ inhibited the activity, whereas, Mn⁺², Zn⁺², and Ca⁺² had no effect on the enzyme. Detergents like Tween 20, Tween 40, Tween 80, and SDS resulted in 4% to 20% increased enzyme production (Table 2).

It was observed that the activity of sialidase enzyme was enhanced in the presence of Mn⁺², Mg⁺², Zn⁺², Ni⁺², and Co⁺² in Clostridium perfringenes. The enzyme activity in the presence of metal ions was found to vary in different species (26).