The incidence of food allergies, like other atopic disorders, has dramatically increased during the past three decades, particularly in developed countries (
1). Nowadays, about 3.9% of the American population suffers from the disease (
2). About 6% of children experience allergic reactions to food in the first year of their lives. These children are allergic to cow’s milk, eggs and peanuts about 2.5, 1.5 and 1 percent respectively (
3). The immaturity of the immune system during infancy allows increased intestinal permeability to food antigens, thus the majority of food hypersensitivity reactions occur at this age (
4). Beside those allergens more than 90% of food allergies in children are due also to soy, nuts, wheat, fish and shellfish (
3,
5). Typically, food allergies during infancy present with irritability, vomiting, diarrhea and impaired weight gain. These symptoms often begin with feeding of cow’s milk or soy (
6). Allergic proctocolitis is the most common allergic reaction. It often occurs as a result of hyper sensibility to cow’s milk protein and can be seen even in exclusively breastfed infants (
3,
7). In early life, allergic proctocolitis presents with blood in the stools of a healthy child (
8). About 60% of cases occur in breast fed infants, the remaining cases occur in cow’s milk fed infants or soy protein-based formula fed infant (
3). The standard method for diagnosis of food allergy is the challenge test: evaluating the symptoms by starting and removal of the suspected food (
9). The treatment of food allergy is empiric just by removing some substances from the mother’s diet (
3,
4,
6). The gold standard method for detection of improvement is evaluation of patient’s clinical symptoms after starting the diet changes (
3). As a result, investigation and follow-up of these patients are always based on clinical response and personal criteria (
3). The calprotectin is a sensitive but nonspecific marker that demonstrates inflammation in the gastrointestinal tract (
10,
11). This protein is released into the intestinal lumen from macrophages, neutrophils, degradation of cells and apoptosis. This marker is used to indicate disease activity and treatment response in cases of inflammation, such as inflammatory bowel disease (IBD) (
10,
12,
13). However, it’s one of the specific markers for other bowel inflammations such bacterial infections (
13-
15).