General
Melting points were measured on an Electrothermal 9100 apparatus and are uncorrected. Infrared spectra were determined with a Perkin-Elmer 843 spectrometer. Proton nuclear magnetic resonance (1H NMR) spectra and carbon nuclear magnetic resonance (13C NMR) spectra were determined on a Bruker Avance DRX 500 MHz spectrometer and chemical shifts are reported as δ (ppm) in CDCl3 and DMSO solution (0.05% v/v TMS). The chemicals used in this work were purchased from Merck, Fluka and Sigma-Aldrich Chemical Companies.
General procedure for preparation of products 5a-w
To a magnetically stirred solution of benzaldehyde derivatives (1 mmol) in methanol (5 mL) was added 2-fluoreneamine (1 mmol) and the reaction mixture stirred at room temperature until the imine was formed. After formation of imine, carboxylic acids (1 mmol) and cyclohexyl isocyanide (1.2 mmol) were added to reaction mixture in 0 ºC in ice bath and then reactions were continued in ambient temperature. After completion of the reaction, as indicated by TLC (ethyl acetate/n-hexane, 2:1), the precipitate was cooled at 0-5°C in an ice bath and was washed with cold hexane several times and then washed with freshly methanol and dried on the vacuum evaporator. Finally, the separated solid was filtered and purified by re-crystallization from ethanol to afford analytically pure product 5a-w.
2.2.1.N-[(cyclohexylcarbamoyl)(3-fluorophenyl)methyl]-N-(9H-fluoren-2-yl)prop-2-ynamide (5a). White solid; yield 75%, mp 199-200 °C; FT-IR (KBr): 1638, 2100, 2858, 2926, 3061, 3281 cm-1. 1H NMR (500 MHz,CDCl3): δ = 1.13 -2.02 (m, 10H), 2.85 (s, 1H), 3.81-3.93 (m, 3H), 5.72 (bs, 1H), 6.03 (s, 1H), 7.06-7.13 (m, 3H), 7.01-7.43 (m, 7H), 7.58 (d, 3JHH =7.4 Hz, 1H), 7.64 (d, 3JHH =8.0 Hz, 1H), 7.78 (d, 3JHH =7.5 Hz,1H). 13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.7, 36.7, 48.9, 64.6, 76.0, 80.9, 115.7, 117.2, 119.6, 120.2, 125.1, 125.9, 126.9, 127.2, 129.2, 129.9, 130.0, 136.0, 137.2, 140.6, 142.1, 143.6, 143.7, 153.9, 162.2(d, 1JCF = 244.5 Hz),167.2. Anal. Calcd for C30H27FN2O2: C, 77.23; H, 5.83; N, 6.00, Found: C, 77.44; H, 5.73; N, 5.92.
Synthesis of fluorene bisamide derivatives examined for anti-mycobacterial activity in this study
| Compound | LD50 (µg/mL)1 | MIC (µg/mL)
| SI4 |
|---|
| M. bovis (1173P2)2 | M. tuberculosis3
|
|---|
| H37Rv | IHMT295-08 | HPV115-08 | HPV65-08 |
|---|
| 5a | 39.69 | 1.95 | 500 | 31.25 | ND5 | ND | 20.35 |
| 5h | 102.7 | 2.34 | 500 | 15.63 | ND | ND | 43.88 |
| 5k | 6.063 | 7.8 | 1 | 1 | 1 | ND | 0.77 |
| Galic acid | 23.84 µg/mL on A. salina |
| Ethambutol | 7.81 µg/mL against M. bovis |
| Isoniazid | <1.9 µg/mL for M.bovis- 0.06 and 40 µg/mL against sensitive and resistant strains of M. tuberculosis |
| DMSO | 1.25% v/v |
For Artemia lethality bioassay, the LD50s with 95% confidence intervals were estimated by GraphPad Prism 5.0 (2007) based on analytical method non-linear regression
MICs were estimated after 24 h based on broth microdilution method
MICs were estimated after 24 h based on broth microdilution method against H37Rv (Pansusceptible Reference Laboratory strain), IHMT149/09 (Clinical XDR-TB strain), HPV115/08 (Clinical XDR-TB strain), and HPV65/08 (Pansusceptible clinical strain), this part of assay were performed at Department of Microbiology, Faculdade de Farma´cia da Universidade de Lisboa, Lisbon, Portugal
The selectivity index (SI)s were determined by dividing LD50 to MIC (M. bovis)
not determined since positive control failed to grow
2.2.2.N-[(3-chlorophenyl)(cyclohexylcarbamoyl)methyl]-N-(9H-fluoren-2-yl)prop-2-ynamide (5b).White solid; yield 50%, mp 208-210 °C; FT-IR (KBr): 1677, 2111, 2855 , 2930, 3061, 3281 cm-1.1H NMR (500 MHz, CDCl3): δ= 1.05 -2.00 (m, 10H), 2.82 (s, 1H), 3.85 (m, 3H), 5.72 (bs, 1H), 6.01 (s, 1H), 7.06 -7.13 (m, 3H), 7.21-7.44(m, 4H), 7.55 (d, 3JHH =7.4 Hz, 1H), 7.6 (d, 3JHH =8.0 Hz, 1H), 7.75 (d, 3JHH =7.5 Hz,1H). 13C NMR (125 MHz, CDCl3): δ = 24.6, 25.4, 32.7, 32.8, 36.7, 48.9, 64.5, 76.0, 80.9, 119.6, 120.2, 125.1, 126.8, 127.2, 128.3, 128.9, 129.2, 129.6, 130.4, 134.2, 135.6, 137.1, 140.6, 142.0, 143.6, 143.7, 153.9, 167.1.
2.2.3.N-[(3-bromophenyl)(cyclohexylcarbamoyl) methyl]-N-(9H-fluoren-2-yl)-prop-2-ynamide (5c).White solid, yield 90%; mp 228-230 °C; FT-IR (KBr): 1678, 2112, 2855, 2930, 3270, 3283 cm -1. 1H NMR (500 MHz, CDCl3): δ= 1.06 -2.01 (m, 10H), 2.82 (s, 1H), 3.79 -3.90 (m, 3H,), 5.70 (bs, 1H), 6.00 (s, 1H), 7.03 -7.11 (m, 3H), 7.32 -7.43 (m, 5H), 7.55 (d, 3JHH=7.3 Hz, 1H), 7.62(d, 3JHH =8.0 Hz, 1H), 7.76 (d, 3JHH =7.5 Hz, 1H). 13C NMR (125 MHz, CDCl3): δ = 24.6, 25.4, 32.71, 36.7, 48.9, 64.4, 76.0, 80.9, 119.6, 120.2, 122.3, 125.1, 126.8, 127.2, 127.3, 128.8, 129.32, 129.9, 131.8, 133.4, 135.9, 137.1, 140.6, 142.1, 143.6, 143.7, 153.9, 167.1.
2.2.4.N-[(4-chlorophenyl) ( cyclohexylcarbamoyl) methyl]-N-(9H-fluoren-2-yl)- prop-2-ynamide (5d).White solid; yield 55%; mp 196-197 °C; FT-IR (KBr): 1655, 2107, 2853, 2932, 3069, 3256, 3275 cm -1.1H NMR (500 MHz, CDCl3): δ =1.05 -2.00(m, 10H), 2.82(s, 1H), 3.78-3.89(m, 3H), 5.67(bs,1H), 6.03(s, 1H), 7.4 -7.13 (m, 8H), 7.55(d, 3JHH= 7.4), 7.61(d, 3JHH= 7.9, 1H), 7.76(d, 3JHH= 7.5,1H).13C NMR (125 MHz, CDCl3): δ =24.6, 24.7, 25.3, 32.7, 32.8, 36.7, 48.9, 64.1, 76.0, 80.9, 119.6, 120.2, 125.1, 126.9, 127.2, 127.3, 128.7, 129.2, 129.3, 131.7, 132.1, 134.8, 136.8, 137.1, 140.6, 142.1, 143.5, 143.6, 153.9, 167.3. Anal. Calcd for C30H27ClN2O2: C, 74.60; H, 5.63; N, 5.80, Found: C, 74.81; H, 5.53; N, 5.72.
2.2.5.N-[(4-bromophenyl)(cyclohexylcarbamoyl) methyl]-N-(9H-fluoren-2-yl)- prop-2- ynamide(5e).White solid; yield 55% ; mp 199-202 °C; FT-IR (KBr): 1655, 2107, 2853, 2931, 3069, 3279 cm -1.1H NMR (500 MHz, CDCl3): δ=1.06-1.99 (m, 10H), 2.82 (s, 1H, C≡CH), 3.78-3.89(m, 3H), 5.70(bs,1H), 6.02 (s, 1H), 7.07-7.76 (m, 11H),.13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.7, 32.8, 36.7, 48.9, 64.2, 76.0, 80.9, 119.6, 120.2, 123.1, 125.1, 126.9, 127.2, 129.3, 131.6, 132.0, 132.7, 137.1, 140.6, 142.1, 143.6, 143.7, 153.9, 167.2.
2.2.6.N-[(cyclohexylcarbamoyl)(2-nitrophenyl)methyl]-N-(9H-fluoren-2-yl)-prop-2-ynamide (5f).White solid, yield 50 %; m.p. 179-180 °C; FT-IR (KBr): 1682, 2109, 2853, 2930, 3074(C-H Ph), 3299cm -1.1H NMR (500 MHz, CDCl3): δ = 1.09-1.99(m, 10H),2.83(s, 1H), 3.75-3.85(m, 3H), 5.78(bs,1H), 6.56(s, 1H),7.31- 7.58(m, 7H), 7.71-7.91(m, 4H).13C NMR (125 MHz, CDCl3): δ =24.7, 24.8, 25.4, 32.6, 32.7, 36.7, 49.2, 60.1, 75.9, 80.8, 117.8, 119.6, 120.1, 124.6, 125.1, 126.9, 127.2, 128.1, 128.9, 129.7, 132.2, 132.7, 136.9, 140.5, 142.1, 143.6, 143.6, 149.7, 153.7, 166.9. Anal. Calcd for C30H26ClN3O4: C, 68.24; H, 4.96; N, 7.96, Found: C, 67.74; H, 5.05; N, 7.88.
2.2.7.N-[(cyclohexylcarbamoyl)(3- nitrophenyl)methyl]-N-(9H-fluoren-2-yl)- prop-2-ynamide (5g).White solid; yield 45%; mp 210-211 °C; FT-IR (KBr): 1647, 2112, 2853, 2928, 3089, 3302 cm -1.1H NMR (500 MHz, CDCl3): δ =1.15- 2.05(m, 10H), 2.86 (s, 1H), 3.78-3.90(m, 3H,), 5.90(bs,1H), 6.14(s, 1H), 7.32-7.62(m, 7H), 7.74-8.18 (m,4H).13C NMR (125 MHz, CDCl3): δ = 24.7, 25.4, 29.6, 32.8, , 36.7, 49.1, 63.9, 75.7, 81.4, 119.8, 120.3, 123.6, 125.1, 125.4, 126.9, 127.1, 127.4, 129.1, 129.2, 135.5, 136.3, 136.5, 140.3, 142.4, 143.6, 143.9, 147.9, 154.1, 166.8.
2.2.8.N-[(cyclohexylcarbamoyl)(4-methylphenyl)methyl]-N-(9H-fluoren-2-yl)-prop-2-ynamide (5h). White solid; yield 80 %; m.p. 225 °C; FT-IR (KBr): 1683, 2108, 2853, 2924, 3054, 3275, 3319 cm -1.1H NMR (500 MHz, CDCl3): δ = 1.12-1.98(m, 10H), 2.26 (s, 3H), 2.8 (s, 1H), 3.76-3.92 (m, 3H), 5.50(bs,1H), 6.02 (s, 1H), 6.99 -7.12 (m, 5H), 7.23-7.48 (m, 3H), 7.54 (d, 3JHH=7.45, 1H), 7.58 (d, 3JHH=7.95, 1H), 7.74 (d, 3JHH= 7.5, 1H).13C NMR (125 MHz, CDCl3): δ =21.1, 24.7, 24.8, 25.4, 29.6, 32.7, 36.7, 48.8, 64.9, 76.2, 80.4, 119.4, 120.1, 125.1, 126.8, 127.1, 127.3, 129.2, 129.4, 130.2, 130.6, 137.6, 138.6, 140.8, 141.7, 143.3, 143.7, 153.8, 167.8. Anal. Calcd for C31H30N2O2: C, 80.49; H, 6.54; N, 6.06, Found: C, 80.21; H, 6.74; N, 6.19.
2.2.9.N-[(cyclohexylcarbamoyl)(2-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)prop-2-ynamide (5i). White solid; yield (46%); m.p.137-139°C; FT-IR (KBr): 1628, 2101, 2854, 2931, 3085, 3281cm-1, 1H NMR (500 MHz, CDCl3) δ ppm:1.01-2.01(m, 10H), 2.77(s, 1H), 3.73-3.94 (m,6H), 5.49 (bs,1H), 6.66-6.78 (m, 2H), 7.06-7.71 (m, 9H).13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.8, 32.8, 36.7, 48.8, 55.2, 58.9, 76.5, 80.1, 110.1, 119.1, 120.1, 120.3, 121.8, 125.0, 126.8, 126.9, 127.1, 128.9, 130.1, 131.1, 137.6, 140.8, 141.5, 143.0, 143.6, 153.8, 157.4, 168.2.
2.2.10.N-[(cyclohexylcarbamoyl)(3-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)-prop-2-ynamide (5j). White solid; yield 55 %; mp 146-148°C; FT-IR (KBr): 1643, 2106, 2851, 2932, 3054, 3282 cm -1. 1H NMR (500 MHz, CDCl3): δ =1.04-1.99 (m, 10H), 2.80(s, 1H), 3.63 (s, 3H), 3.81-3.88 (m, 3H), 5.58 (bs,1H), 6.01 (s,1H), 6.77 (m, 3H), 7.12 (m, 2H), 7.27-7.4 (m,3H), 7.54 (d, 3JHH= 7.35, 1H), 7.6 (d, 3JHH= 7.9, 1H), 7.74 (d, 3JHH=7.5, 1H).13C NMR (125 MHz, CDCl3): δ =24.7, 24.8, 25.4, 32.7, 36.7, 48.8, 55.1, 65.1, 76.2, 80.6, 114.7, 115.4, 119.4, 120.1, 122.6, 125.1, 126.8, 127.1, 127.3, 129.3, 129.4, 135.1, 137.5, 140.7, 141.8, 143.3, 143.6, 153.9, 159.4, 167.5.
2.2.11.N-[(cyclohexylcarbamoyl)(4-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)-prop-2-ynamide (5k).White solid; yield 65 %; mp 164-165 °C; FT-IR (KBr): 1643, 2106, 2851, 2932,3282, 3222, 3055 cm -1.1H NMR (500 MHz, CDCl3): δ =1.01-1.99 (m, 10H,), 2.79(s, 1H), 3.73(s, 3H), 3.82-3.89 (m, 3H), 5.55 (bs,1H), 6.05 (s,1H), 6.71-7.59 (m, 10H).13C NMR (125 MHz, CDCl3): δ =24.7, 24.8, 25.4, 32.8, 36.7, 48.8, 55.1, 64.3, 76.2, 80.4, 113.8, 119.4, 120.1, 125.1, 125.6, 126.8, 127.1, 127.4, 129.5, 131.7, 137.4, 140.7, 141.7, 143.3, 143.7, 153.8, 159.7, 167.9. Anal. Calcd for C31H30N2O3: C, 77.80; H, 6.32; N, 5.85, Found: C, 77.92; H, 6.36; N, 5.89.
2.2.12.N-[(cyclohexylcarbamoyl)(3-fluorophenyl)methyl]-N-(9H-fluoren-2-yl)-3-phenylprop-2-ynamide (5l).white solid; yield 50 %; mp 210-211 °C; FT-IR (KBr): 1693, 2218, 2854, 2931, 3061, 3321cm -1.1H NMR (500 MHz, CDCl3): δ = 1.09-2.03(m, 10H), 3.79-3.91(m, 3H), 5.86(bs,1H), 6.08(s, 1H), 6.74-6.97(m, 3H), 7.01-7.06(m, 4H), 7.12-7.27(m, 11H).13C NMR (125 MHz, CDCl3): δ =24.7, 24.8, 25.4, 32.7, 32.8, 36.8, 48.9, 64.7, 82.4, 92.5, 115.5, 115.7, 117.1, 117.3, 119.5, 120.2, 125.1, 125.9, 126.8, 127.1, 128.2, 129.3, 129.9, 132.4, 136.4, 138.1, 140.7, 141.8, 143.5, 143.7, 155.2, 162.4(d, 1JCF = 245.7 Hz, CF), 167.5. Anal. Calcd for C36H31FN2O2: C, 79.68; H, 5.76; N, 5.16, Found: C, 79.83; H, 5.54; N, 5.21.
2.2.13.N-[(3-chlorophenyl)(cyclohexylcarbamoyl)methyl]-N-(9H-fluoren-2-yl)-3-phenylprop-2-ynamide (5m).white solid; yield 60 %; mp191-192 °C; FT-IR (KBr): 1655, 2216, 2854, 2935, 3082, 3264 cm-1. 1H NMR (500 MHz, CDCl3): δ = 1.12 -2.03 (m, 10H), 3.91-3.8(m, 3H), 5.86(bs,1H), 6.07(s,1H), 7.01-7.15(m, 6H), 7.22-7.42(m, 7H), 7.56(d, 3JHH= 7.4, 1H), 7.66(d, 3JHH= 8.0, 1H), 7.79(d, 3JHH= 7.5,1H).13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.7, 32.8, 36.8, 48.9, 64.6, 82.4, 92.6, 119.5, 120.1, 120.2, 125.1, 126.8, 127.1, 127.2, 128.2, 128.3, 128.7, 129.3, 129.6, 129.9, 130.4, 132.4, 134.2, 136.0, 137.9, 140.7, 141.8, 143.5, 143.7, 155.2, 167.4.
2.2.14.N-[(3-bromophenyl)(cyclohexylcarbamoyl) methyl]-N-(9H-fluoren-2-yl)-3-Phenylprop-2- ynamide (5n). White solid; yield 63 %; mp 189-190 °C; FT-IR (KBr): 1655, 2215, 2854, 2934, 3082, 3267cm -1. 1H NMR (500 MHz, CDCl3): δ = 1.12-2.03(m, 10H), 3.80-3.91(m, 3H), 5.86(bs,1H), 6.07(s,1H), 7.01-7.48(m, 16H), 7.56 (d, 3JHH= 7.4Hz, 1H), 7.67(d, 3JHH= 8.0 Hz, 1H), 7.79(d, 3JHH= 7.5Hz,1H).13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.7, 32.8, 36.8, 48.9, 64.5, 82.3, 92.6, 119.5, 120.1, 120.2, 122.3, 125.1, 126.8, 127.1, 127.2, 128.2, 128.8, 129.4, 129.8, 129.9, 131.7, 132.4,133.3,136.2, 137.8,140.7, 141.8, 143.5, 143.7, 155.2,167.4.
2.2.15.N-[(4-chlorophenyl)(cyclohexylcarbamoyl) methyl]-N-(9H-fluoren-2-yl)- 3- Phenylprop-2-ynamide (5o). White solid; yield 76%; mp 200-204 °C; FT-IR (KBr): 1655, 2216, 2932, 2854, 3082, 3271cm-1.1H NMR (500 MHz, CDCl3): δ= 1.12-2.0 (m, 10H),3.8-3.9(m,3H),5.82(s,1H),6.1(s,1H), 7.00-7.02(m,3H), 7.13(t, 2H),7.2(m, 4H), 7.27-7.24(m, 1H), 7.36-7.33(m, 1H), 7.41(t, 1H),7.57(d, J=7.3, 1H),7.6d, J=8.0, 1H), 7.79(d, J= 7.5, 1H).13C NMR (125 MHz, CDCl3): δ= 24.7, 25.4, 29.6, 32.7, 32.8, 36.8, 48.9, 64.2, 82.4, 92.6, 119.5, 120.1, 120.2,125.1, 126.8,126.9,127.1,127.2,128.2,128.6,129.4,129.9, 131.7,131.8,132.4,132.5, 132.6, 134.6, 137.2,137.8,140.7,141.8,143.5,143.7, 155.2,167.6.
2.2.16.N-[(4-bromophenyl)(cyclohexylcarbamoyl)methyl]-N-(9H-fluoren-2-yl)-3- Phenylprop-2- ynamide (5p).White solid; yield 85%; mp 209-210 °C; FT-IR (KBr): 1656, 2216, 2931, 2853, 3079, 3277 cm-1.1H NMR (CDCl3): δ = 2.06-1.08(m, 10H),3.91-3.80(m, 3H), 5.81(d,1H), 6.08(s, 1H),7.02-7.(m,2H),7.15-7.12(m, 5H), 7.27-7.24 (m, 2H), 7.36-7.34(m, 3H), 7.41(t,1H), 7.57(d, J=7.4, 1H), 7.66 (d, J=8.0, 1H), 7.79 (d, J= 7.5, 1H),7.35 (m, 3H).13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 29.6, 32.7, 32.8, 36.8, 48.9, 64.3, 82.3, 92.6, 119.5, 120.1, 120.2, 122.9, 125.1,126.8, 127.1, 127.2, 128.2, 129.4, 129.9, 131.6,131.9, 132.4,133.0, 137.8, 140.7,141.8, 143.5,143.7,155.2, 167.6. Anal. Calcd for C36H31BrN2O2: C, 71.64; H, 5.18; N, 4.64, Found: C, 70.87; H, 5.27; N, 4.54.
2.2.17.N-[(cyclohexylcarbamoyl)(2-nitrophenyl)methyl]-N-(9H-fluoren-2-yl)-3- Phenylprop-2-ynamide (5q). Pale yellowish solid; yield 60%; mp 152-154 °C; FT-IR (KBr): 1684, 2214,2930, 2853,3066, 3262 cm-1.1H NMR (500 MHz, DMSO-d6):δ= 1.72-0.94(m, 10H), 3.59-3.57(m,1H),3.82-3.73(m,2H), 7.07-7.05(m,2H), 7.45-7.21(m, 10H),7.55(d, J= 7.4, 1H), 7.77-7.64(m, 2H), 7.83(d, J= 7.4, 1H),8-7.98(m,1H), 8.25(d, J= 7.6, 1H). 13C NMR (125 MHz, CDCl3): δ = 24.2, 25.1,31.9, 36.2, 39.0,48.1,59.7,82.8, 90.5, 119.4,120.3, 125.0, 127.0, 128.8,129.6, 130.4, 131.7,132.5, 125.0, 127.0, 128.8, 129.6, 130.4, 131.7, 132.5, 133.2, 137.4, 140.1, 140.9, 143.4, 149.1, 153.1, 167.1.
2.2.18.N-[(cyclohexylcarbamoyl)(3-nitrophenyl)methyl]-N-(9H-fluoren-2-yl)-3- Phenylprop-2-ynamide (5r). White solid; yield 83 %; mp 189-190 °C; FT-IR (KBr): 1655, 2217, 2935, 2853,3081, 3260 cm -1.1H NMR (500 MHz, CDCl3): δ= 2.07-1.20 (m, 10H), 3.91-3.79(m, 3H), 6.24(m, 2H), 7.02-7.67(m,13H), 7.78(d,J=7.5,1H),8.09-8.11(m,1H), 8.23-8.24(m,1H).13C NMR (125 MHz, CDCl3): δ = 24.7, 25.4, 29.7,32.7,32.8,36.8, 49.0,63.9,82.1, 93.2, 119.8,120.2, 122.4, 123.5, 124.6, 125.1, 125.3, 126.9, 127.0, 127.3, 128.3, 129.1, 129.2, 130.2, 130.8, 132.3, 135.9, 136.3, 137.3, 140.4, 142.1, 143.7, 143.8, 147.9, 155.4, 167.1.
2.2.19.N-[(cyclohexylcarbamoyl)(4-nitrophenyl)methyl]-N-(9H-fluoren-2-yl)-3- phenylprop-2-ynamide (5s). White solid; yield (50%); mp 200-203°C; FT-IR (KBr): 1631, 2200, 2924, 2857,3339 cm -1.1H NMR (500 MHz, CDCl3): δ= 1.26- 2.10 (m, 10H), 3.88- 3.94 (m, 3H, CH2),6.10 (bs, 1H),6.21(s, 1H),8.13-7.05 (m, 16H). 13C NMR (125 MHz, CDCl3): δ = 22.7, 24.7, 25.4, 29.3, 31.4, 31.9, 36.8, 49.0, 64.2, 83.2, 94.5, 119.8, 120.4, 123.4, 123.9, 124.4, 125.2, 126.9, 127.0,127.4, 128.3, 129.1,130.2, 131.2, 132.5,140.5, 141.0, 143.7, 143.8,167.1. Anal. Calcd for C36H31N3O4: C, 75.90; H, 5.49; N, 7.38, Found: C, 74.85; H, 5.54; N, 7.43.
2.2.20.N-[(cyclohexylcarbamoyl)(4-methylphenyl)methyl]-N-(9H-fluoren-2-yl)-3-Phenylprop-2-ynamide(5t).White solid; yield 62 %; mp 165-167 °C; FT-IR (KBr):1642, 2219, 2855, 2926 and, 3064, 3257cm -1.1H NMR (500 MHz, CDCl3): δ= 1.04-2.00(m, 10H), 2.28(s,3H), 3.84(m,3H),5.66(d, 1H),6.09(s,1H),7-7.41(m,13H),7.55(d, J=7.6, 1H),7.63(d, J=8.0, 1H),7.77(d, J=7.5, 1H).13C NMR (125 MHz, CDCl3): δ = 20.9, 21.1,24.7,24.8, 25.47,32.8,36.8,48.8, 65.0, 82.6, 92.1,119.3,119.8,120.1, 120.3, 124.8, 125.1, 126.8, 126.9, 127.3, 128.2, 129.2,129.5,129.8,129.9,130.2, 130.9, 132.4, 138.3, 138.4,140.9, 141.4, 143.2, 143.3, 143.7, 155.1, 168.1. Anal. Calcd for C37H34N2O2: C, 82.50; H, 6.36; N, 5.20, Found: C, 82.32; H, 6.57; N, 5.48.
2.2.21.N-[(cyclohexylcarbamoyl)(2-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)-3-phenylprop-2-ynamide (5u). White solid; yield 65%; mp 186-188 °C; FT-IR (KBr): 1685, 2213, 2858, 2931, 3067,3335cm-1.1H NMR (500 MHz, CDCl3): δ= 1.04-2.04(m, 10H), 3.75- 3.91(m, 6H),5.58(d,1H), 6.45(s, 1H),6.70(s, 1H), 6.78(d,1H), 7.02(m,2H), 7.39-7.11 (m,9H),7.53(d, 1H),7.57(d,1H), 7.74 (d, 1H). 13C NMR (125 MHz, CDCl3): δ = 24.8,25.5,29.6, 31.2, 32.8, 36.7, 48.7, 55.2, 59.1, 82.9, 91.6,110.1,118.9, 120.1, 120.3, 120.5,122.2,125.1, 126.7, 126.8, 127.2, 128.1,129.1, 129.6, 130.1,131.1,138.4,132.3, 141.0,143.0, 141.2, 143.7,155.1,157.4, 168.5.
2.2.22.N-[(cyclohexylcarbamoyl)(3-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)-3-Phenylprop-2-ynamide (5v). White solid; yield 85 %; mp 187-189 °C; FT-IR (KBr): 1655, 2217, 2854, 2932, 3089,3265 cm-1.1H NMR (500 MHz, CDCl3): δ= 1.15-2.01(m, 10H), 3.65 (m, 3H),3.84(m,3H),5.78(bs, 1H, NH),6.80(m, 3H), 6.1(s, 1H), 7.01(m,2H), 7.14(m, 3H),7.25(m, 2H), 7.33(m, 1H), 7.4(t, 1H), 7.55(m, 2H), 7.64(d,1H),7.77(d, J=7.5, 1H). 13C NMR (125 MHz, CDCl3): δ = 24.7, 24.8, 25.4, 32.7, 36.7, 48.8,55.1,65.2,82.6, 92.2, 114.6, 115.4, 119.3, 120.1, 120.2,122.5, 125.1,126.8,126.9,127.3,128.2,129.4,129.5, 129.8, 132.3, 135.4, 138.3, 140.8,141.5, 143.2, 143.7, 155.1, 159.4, 167.8. Anal. Calcd for C37H34N2O3: C, 80.12; H, 6.18; N, 5.05, Found: C, 81.11; H, 6.24; N, 5.09.
2.2.23.N-[(cyclohexylcarbamoyl)(4-methoxyphenyl)methyl]-N-(9H-fluoren-2-yl)-3-Phenylprop-2-ynamide (5w). White solid; yield 50 %; mp 169-171 °C; FT-IR (KBr): 1642, 2217, 2854, 2932,3074, 3266 cm -1. 1H NMR (500 MHz, CDCl3): δ = 1.05-2.01 (m, 10H), 3.74(s, 3H), 3.78-3.90(m,3H), 5.7 (bs,1H), 6.12(S,1H), 6.73(d,2H), 7.10-7.42(m, 9H), 7.01(d, 2H),7.55 (d, 3J=7.4, 1H), 7.63 (d, J=7.9, 1H),7.77( d, J=7.5, 1H).13C NMR (125 MHz, CDCl3): δ = 24.7, 24.7, 25.4, 32.8, 36.7, 48.8, 55.1, 64.3, 76.2, 80.4, 113, 119.4, 120.1, 125.1, 125.6, 126.8, 127.1, 127.4, 129.5, 131.7, 137.4, 140.8, 141.7, 143.3, 143.7, 153.8,159.7,167.9. Anal. Calcd for C37H34N2O3: C, 80.12; H, 6.18; N, 5.05, Found: C, 79.17; H, 6.29; N, 5.20.
In-vitro evaluation of anti-mycobacterial activity
In vitro anti-mycobacterial activity evaluations of the compounds were done by the broth dilution method) against BCG (1173P2) in addition to several sensitive and resistant strains of M.tuberculosis (H37Rv, IHMT149/09, HPV115/08 and HPV65/08) and ethambutol were used as standard controls.
The test compounds were initially dissolved in DMSO to give a concentration of 1 or 2 mg/L. All wells of micro plates received 100 µL of freshly prepared Middle broke 7H9 medium (Himedia, India), except first column. 200 µL of distilled water was added to the first column of 96 well plates to minimize evaporation of the medium in the test wells during incubation. Then 100 µL of test compounds with desired concentrations (2000 µL) were added to the wells of the first row (each concentration was assayed in duplicate) and serial dilution was made from the first row to the last.
Microbial suspension of BCG (1173P2) (100 µL), which had been prepared with standard concentration of 0.5 Mcfarland and diluted with 1:10 proportion by the distilled water, was added to all test wells. Plates were then sealed and incubated for 4 days at 37 °C. After that 12 µL Tween 80 10% and 20µL Alamar blue 0.01% (Himedia, India) were added to each test well.The plates were re-incubated at 37 °C.The results were assessed after 24 and 48 h. A blue color was interpreted as no bacterial growth, and color change to pink was scored as bacterial growth. Wells with a well-defined pink color were scored as positive for growth. The MIC (minimal inhibition concentration) was defined as the lowest drug concentration, which prevented a color change from blue to pink. Ethambutol (Irandaru, Tehran) were used as positive control and DMSO as negative control.
Brine shrimp toxicity study
Brine shrimp lethality bioassay (
28-
31) was carried out to explore the toxicity of selected compounds with anti-mycobacterial potency.
Dried cysts (1 g cyst per liter) of brine shrimp (Artemia salina) were hatched in a bottle containing artificial sea water (3.5% (w/v) marine salts/distilled water) at 28–30 °C with strong aeration (flow rate of 7 L/min), under a continuous light regime (1600 lux) for 30-35 h. Consequently, the newly hatched brine shrimp larvae (nauplii) were separated from the remaining cysts and collected with a pipette from the lighted side and concentrated in Petri dishes to be immediately utilized for bioassay. Assays were carried out in 24-well flat test plates (Orange Scientifique, Belgium).
Acetone100% (Merck, Germany) was utilized for the preparation of different concentrations (1000, 100, 10 and 1 μg/mL) of tested compounds, in triplicates. Each well of treated groups exposed with several concentration of acetone dissolved compounds in the basic salt medium (3.5% (w/v) marine salts /distilled water in addition to poly ethylene glycol (PEG) 6000 (Merck, Germany)1.2%, while control groups only received basic salt medium. Gallic acid (Merck, Germany) was utilized as positive control; respectively. Following evaporation of vehicle solvent, entire wells introduced with 10 fresh nauplii and put on a shaker with 40 rpm to be aerated at room temperature. After 24 h, the numbers of survivors (larvae were considered dead if they did not exhibit any internal or external movement during several seconds of observation) were counted by microscope AC 230V, 50 Hz (Sairan, Iran) and recorded to determine the corrected mortality via following formula:
Corrected mortality (%) = [(Mmct)t - (Mmct)c / 100 - (Mmct)c] * 100
Here:
Mmct (mortality of individuals at time t %) = [NMm (number of died individuals) / N0 (initial number of living individuals in every test well at the beginning of the test)] * 100
(Mmct)t = calculated Mmct for treated test wells
(Mmct)c = calculated Mmct for control test wells
On the subject of calculated corrected mortality, relevant 50% lethality doses (LD
50)s with 95% confidence intervals were estimated by GraphPad Prism 5.0 (2007) for each selected anti-mycobacterial compound (
30).