Classification methods provided a mapping from the input space (See
Table 1) to the categorical output space, i.e, positive and negative classes. Up to this point, we had employed four classification methods, namely, linear regression (LinReg), logistic regression (LogReg), ANNs, and naive Bayesian classifier (NBC) (
12). The classification algorithms tried to learn the characteristics of the classes using the training data subset in a training phase. Then, the classification performance was tested on validation data subset to examine how the mapping could be generalized to new patterns. We trained an ANN with three and five neurons in the first and the hidden layers by minimizing classification error through the back-propagation algorithm. To train LinReg, LogReg, and NBC, we applied matrix pseudoinverse, iteratively reweighted least squares, and single variable histogram calculating algorithms, respectively.
To analyze the performance, we used the four well-known diagnostic test indices, namely, sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV). In addition, ratio indices, namely, positive likelihood ratio (PLR) and negative likelihood ratio (NLR) as screening criteria were reported. Confidence intervals of diagnostic test and ratio indices were calculated using Wilson score method (
13) and the method introduced by Simel et al., respectively (
14).