Polymorphism of CYP46A1 Gene and Alzheimer’s Disease in the Iranian Population

authors:

avatar Rohollah Mousavidehmordi 1 , avatar Hossain Babaahmadi 1 , avatar Bita Shalbafan 2 , avatar Ghorban Mohammadzadeh 1 , avatar Mohammadreza Afsharmanesh 1 , avatar Alireza Kheirollah 1 , *

Department of Biochemistry, Medical School, Cellular & Molecular Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, IR Iran
Department of Neurology, Medical School, Jundishapur University of Medical Sciences, Ahvaz, IR Iran
Shiraz E-Medical Journal: Vol.17, issue 9; e59932
published online: September 21, 2016
article type: Research Article
received: August 2, 2016
revised: September 8, 2016
accepted: September 17, 2016
DOI: https://doi.org/10.17795/semj41218

how to cite: Mousavidehmordi R, Babaahmadi H, Shalbafan B, Mohammadzadeh G, Afsharmanesh M, et al. Polymorphism of CYP46A1 Gene and Alzheimer’s Disease in the Iranian Population. Shiraz E-Med J. 2016;17(9):e59932. https://doi.org/10.17795/semj41218.

Abstract

Background:

Cholesterol homeostasis in the brain has been demonstrated in the pathogenesis of Alzheimer’s disease (AD). Experimental data support that brain cholesterol turnover can modulate central processes in AD pathogenesis. Excess cholesterol is eliminated from the brain via hydroxylation mediated by cholesterol 24S-hydroxylase (CYP46A1), a main mechanism of maintaining cholesterol homeostasis. The CYP46A1 gene has been suggested as a genetic risk factor for AD.

Methods:

In this case-control study, we analyzed an intronic CYP46A1 gene single-nucleotide polymorphism (SNP) in 100 AD patients and 80 age- and sex-matched control subjects in the Iranian population.

Results:

We found a significant difference in CYP46A1 TT-homozygotes genotype (χ2 = 5.06, df =1, P = 0.02) and T allele frequency (χ2 = 6.09, df = 1, P = 0.01) between AD patients and controls.

Conclusions:

The results of our study indicate that intron T/C polymorphism of the CYP46A1 gene is associated with AD in the Iranian population, and that the CYP46A1 TT genotype or T allele frequency might be a genetic risk factor for AD and increase susceptibility to AD.

1. Background

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder and the most common cause of dementia that affects memory and cognitive function. It is characterized by intracellular neurofibrillary tangles that consist of hyper phosphorylated twisted filaments of the microtubule-associated protein tau and extracellular senile plaques that comprise β-amyloid peptide (1, 2). Variability of cholesterol metabolism and distribution in the brain has been demonstrated in the pathogenesis of AD, and experimental data support that brain cholesterol turnover can modulate central processes AD pathogenesis (3). Homeostasis of brain cholesterol is very stable compared to the cholesterol of the periphery. Cholesterol is mainly synthesized locally in the brain, as its transfer is restricted by the blood-brain barrier (4). Therefore, homeostasis of cholesterol in the brain occurs via catabolized of excess cholesterol into 24S-hydroxcholesterol (24OHC), which is catalyzed by cholesterol 24S-hydroxylase enzymes (CYP46A1; Cytochrome P450, family 46, subfamily A, polypeptide 1) and then secreted from the central nervous system into the plasma across the blood-brain barrier (5). Also termed an oxysterol, 24 OHC is the major removal metabolite of the brain cholesterol. As high levels of neurotoxic 24 OHC may contribute to advanced neurodegeneration, it is considered a genetic risk factor for AD (6).

It also is believed that an increased or decreased concentration of 24 OHC metabolite in the brain may favor the development of AD by accelerating the accumulation of beta-amyloid and promoting neuronal death (7). The CYP46A1 gene is 42,985 bases long and resides on human chromosome 14 q32.1. This gene encodes cholesterol 24-hydroxylase, a member of the cytochrome P-450 superfamily, and converts cholesterol to 24 OHC. Cholesterol 24-hydroxylase is expressed in the brain, where it regulates the elimination of excess cholesterol (8, 9). Genetic variants of several genes are involved in the etiology of AD. Polymorphism in the presenilin-1 (PSEN1), presenilin-2 (PSEN2), and amyloid precursor protein (APP) genes has been identified as a primary contributor in familial autosomal-dominant AD (10); however, familial AD is responsible for just 2% of total Alzheimer’s patients (11). The majority of Alzheimer’s patients manifest with sporadic late-onset AD (LOAD), which appears after age 65. In recent decades, several candidate genes have been associated with LOAD. Among these, the ApoE4 allele of Apo lipoprotein E gene has been recognized as the only demonstrated genetic risk factor for LOAD (12).

Several studies indicate that polymorphisms in the CYP46A1 gene influence beta-amyloid peptide load in the brain and that susceptibility of this polymorphism with the risk of AD (6, 13). In addition, polymorphism (T/C, rs754203) in the CYP46A1 gene is associated with an increased risk for AD along with increased beta-amyloid load in brain tissues and with increased cerebrospinal fluid levels of beta-amyloid peptides and phosphorylated tau protein was reported (14). In studies of the relationship between CYP46A1 gene polymorphism and AD risk, a single nucleotide polymorphism (SNP) T/C in the region rs754203 of the CYP46A1 gene has been identified, and a significant correlation with an increased risk for AD has been revealed. According to these studies, the frequency of both the CYP46A1 TT-homozygotes genotype and the T allele was significantly higher in AD patients than in controls (15-17). Conversely, other studies reported that the CC-homozygotes genotype was observed more frequently in AD patients than in the control subjects (18-20). Other, similar studies failed to show any significant association between CYP46A1 gene polymorphism and AD risk (21, 22).

2. Objectives

In this study, therefore, we investigated the association between polymorphism T/C in the region rs754203 of the CYP46A1 gene and AD in the Iranian population.

3. Methods

A total of 100 AD patients (mean age = 72.7 years, SD = 10.5, range = 51 - 94) and 80 controls (mean age = 71.1 years, SD = 6.4, range = 65 - 91) were recruited from outpatient clinics of several medical centers. The diagnosis of AD patients by neurological physicians was based on criteria in the diagnostic and statistical Manual of mental disorders (DSM-IV), a manual published by the American psychiatric association (APA) that includes all currently recognized mental health disorders, and supported by neurological examination, neuroimaging data including computed tomography (CT) or magnetic resonance imaging (MRI), and cognitive function tests, including mini-mental state examination (MMSE). Control subjects were selected through evaluation of medical history and neurological examination. Neurological physicians performed MMSE to assess the cognitive function in control subjects. All control subjects had MMSE scores of ≥ 26. All subjects were Iranian, originating from three limited geographical areas: in the capital of Khuzestan, Fars, and Isfahan provinces. Informed consent to participate in the study was obtained from all subjects, either directly or via guardians.

The study protocol was approved by the ethics committee of the Ahvaz Jundishapur University of Medical Sciences, Iran. Genomic DNA was isolated from whole blood samples using the QIAamp blood kit (QIAGEN, Hilden, Germany). A 632 base pairs (bp) polymerase chain reaction (PCR) product containing the CYP46A1 gene SNP was amplified using the forward primer 5′-TCCTCCTACCTTAACCGACTCAG-3′ and reverse primer 5′-GACTCCCAGCCTCACCTTCC-3′. Amplification primers were designed by Alell ID software. PCR was performed using 1 µg of genomic DNA in 25 µL of reaction mixture consisting of 0.2 µM of each primer, 12.5 µL master mix PCR (Taq DNA Polymerase 2x Master Mix RED; Ampliqon, Denmark). After initial denaturation at 95°C for 5 minutes, the reaction conditions were subjected to 35 cycles of 30 seconds ECONDS denaturation at 95°C, 30 seconds annealing at 56°C, and 60 seconds extension at 72°C, followed by a final 5 minutes extension step at 72°C.

Analysis

All statistical analyses were performed with the statistical package for social sciences (SPSS) software. Allelic frequencies were estimated by the allele counting method. Comparison of genotype and allelic frequencies between AD patients and controls was analyzed by Pearson χ2 tests. The Hardy-Weinberg equilibrium was performed with the Gene pop software (the exact HW test) for both populations. Statistical significance was assumed at P < 0.05.

4. Results

Table 1 shows the frequency of men and women, the mean age at the time of the study, and MMSE scores in the 180 AD patients and control subjects recruited for this study. All control subjects were matched well to AD patients by sex and age. No significant differences in the mean age (P = 0.35) and sex (P = 0.65) were observed between the patients and the control subjects. The distribution of CYP46A1 genotypes followed the Hardy-Weinberg equilibrium among AD patients and control subjects. All control subjects had MMSE scores of ≥ 26.

Table 1.

Frequency of Sex Distribution, the Mean Age, and MMSE Scores in AD Patients and Controls

SubjectsNumberGenderMean ageRangeMMSE
MaleFemale
AD patients100386272.7 years51 - 94 yearsVariable
Controls80334771.1 years65 - 91 years26 ≤ MMSE
Total 18071109

Genotyping of the CYP46A1 SNP was performed by digesting the PCR product with the Fast Digest MspI restriction enzyme (Thermo Scientific or Fermentas, Germany). The CYP46A1 T allele corresponded to the uncut 632 bp product, while the CYP46A1 C allele was recognized by two fragments of 392 and 240 bp. These fragments were migrated on a 1% agarose gel (Cinnagen, Iran) stained with DNA-safe stain (Cinnagen, Iran) and visualized under ultraviolet light. Distribution of the CYP46A1 genotypes and allele frequencies in AD patients and control subjects, when AD and control groups were stratified by sex, is shown in Table 2. The results of our study indicated that the distribution of CYP46A1 TT-homozygotes genotypes was significantly different in AD patients and controls in female subsets when AD and control groups were stratified by sex (χ2 = 5.06, df = 1, P = 0.02).

Table 2.

CYP46A1 Genotype Distribution and Allele Frequencies in AD Patients and Control Groups, Stratified by Sex in Male and Female Subsetsa

Genotype and Allele FrequencyTotalPMalePFemaleP
PatientsControlsPatientsControlsPatientsControls
TT-homozygote56420.1515190.4941230.02
TC-heterozygote38350.7220130.2218220.52
CC-homozygote 630.31310.31320.65
T-Allele1501190.0550510.92100680.01
C-Allele50410.3426150.0824260.77

aValue for χ2 test of differences in CYP46A1 genotype and allele frequencies between AD patients and controls.

The CYP46A1 allele frequencies in Iranian AD patients were 25.0% for C allele and 75.0% for T allele. Significant differences were found between the distributions of CYP46A1 T allele in female subsets (χ2 = 6.09, df = 1, P = 0.01) of AD patients and controls when stratified by sex. No significant difference in total distribution of the CYP46A1 genotypes and allele frequencies was observed between the cases when AD patients and control subjects were not stratified by sex (Table 2).

5. Discussion

DNA sequencing of the CYP46A1 gene revealed that each gene contained 14 introns and 15 exons. The mRNA of the CYP46A1 gene is mainly expressed in the gray matter of the brain. In studies of animals, abundant mRNA of the CYP46A1 gene was also found in neurons of the cerebral cortex, hippocampus, and thalamus (9). These brain structures are known to be preferentially affected in AD brains. An increasing number of studies have suggested that CYP46A1 gene polymorphism occurs in the development of AD. The majority of studies have focused on investigating the association of SNP (T/C) in the region rs754203 of the CYP46A1 gene with AD. However, these studies have shown contradictory or inconsistent results (23). According to these study reports, the volumes of parahippocampal and hippocampal gray matter in subjects with the TT-homozygotes genotype positive were smaller than in CC-homozygotes and CT-heterozygotes genotype subjects (24). In addition, previous studies showed that brain β-amyloid load and cerebrospinal fluid levels of phosphorylated tau protein in AD patients with the CYP46A1 gene TT-homozygotes genotype were significantly higher than in subjects without the TT-homozygotes genotype. Therefore, polymorphism of the CYP46A1 gene may be involved in the pathogenesis of AD by regulating β-amyloid generation indirectly (14).

The present study is the first to research the association analysis of polymorphism T/C in the region rs754203 of the CYP46A1 gene with AD in the Iranian population. Our study reports on the association of CYP46A1 gene polymorphism with AD risk in the Iranian population. In this case-control study, we observed that the distribution of CYP46A1 TT-homozygotes genotypes and T allele frequencies was significantly different in AD patients and controls. When AD patients and control subjects were not stratified by sex, no significant difference was observed in distribution of the CYP46A1 genotypes and allele frequencies. A possible, and more likely, reason may be that the smaller number of male subsets than female subsets in AD patients is responsible for the lack of association between TT-homozygotes genotypes and T allele status with increases in the risk of AD in male subsets.

According to the largest meta-analysis, consisting of 4,875 AD patients and 4,874 control subjects from twenty-one studies, the association between CYP46A1 gene T/C (rs754203) polymorphism and an increased risk of AD is both significant and correlated (23). Recently, the AlzGene database published a total of twenty-seven studies showing correlation between T/C (rs754203) polymorphism and AD risk. According to this report, several of these studies have implicated that polymorphism of the CYP46A1 gene is associated with the risk of AD (AlzGene; www.alzgene.org). Nevertheless, the results were inconsistent among the positive studies. For example, TT-homozygotes genotype and T allele frequency was reported as posing a higher risk of AD in two Caucasian and Chinese populations (14, 15). However, according to the outcomes of other studies, CC-homozygotes genotype was higher in AD patients than in control subjects (25, 26). Most likely, the disagreements between the studies could be correlated to the ethnic variability in different populations or methodological differences. These results also could mean that the susceptibility of polymorphism with the risk of AD may vary in different ethnic populations.

In conclusion, the results of our study indicate that intron polymorphism T/C in the region rs754203 of the CYP46A1 gene is associated with AD in the Iranian population, and that CYP46A1 TT genotype or T allele frequency might be a genetic risk factor for AD and increase the susceptibility to AD in the Iranian population. Polymorphism T/C in the region rs754203 of the CYP46A1 gene is not the only polymorphism in this gene; other polymorphisms in CYP46A1 gene but also may increase the risk for AD (4, 18). Synergistic interaction may exist between the polymorphism of the CYP46A1 gene and other genes involved in the cholesterol metabolism, such as the ApoE4 allele of Apo lipoprotein E gene (15, 20). Therefore, further studies investigating the effects of CYP46A1 gene polymorphism on homeostasis of cholesterol in the brain are needed in the future to confirm the substantial role of this gene in the pathogenesis of AD.

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