1. Background
2. Objectives
3. Methods
3.1. Sample Collection and Biomarker Analysis in Gastric Cancer
| Variables | Gender | |
|---|---|---|
| Female (N = 7) | Male (N = 18) | |
| Age | ||
| < 50 | 1 (14.28) | 2 (11.11) |
| 50 - 64 | 1 (14.28) | 1 (5.55) |
| 65 > | 5 (71.42) | 15 (83.33) |
| Tumor stage | ||
| IA | - | 1 (5.55) |
| IB | - | 2 (11.11) |
| II | 1 (14.28) | 4 (22.22) |
| IV | 5 (71.42) | 5 (27.77) |
| IIIA | 1 (14.28) | 6 (33.33) |
| Grade | ||
| 1 | 3 (42.85) | 6 (3.33) |
| 2 | 2 (28.57) | 5 (27.77) |
| 3 | 2 (28.57) | 7 (38.88) |
| TNM (T) b | ||
| T2b | - | 2 (11.11) |
| T3 | 7 (100) | 13 (72.22) |
| T1b | - | 1 (5.55) |
| T2a | - | 2 (11.11) |
| TNM (N) c | ||
| N0 | 1 (14.28) | 9 (50) |
| N1 | 4 (57.14) | 8 (44.44) |
| N2 | 1 (14.28) | - |
| N3 | 1 (14.28) | 1 (5.55) |
| TNM (M) d | ||
| M1 | 4 (57.14) | 4 (22.22) |
| M0 | 3 (42.85) | 14 (77.77) |
a Values are expressed as No. (%).
b T (Tumor): Refers to the dimensions and spread of the initial tumor: T1, the tumor has spread into either the lamina propria (T1a) or the submucosal layer (T1b); T2, cancerous growth has extended into the muscularis propria (T2a) or possibly the submucosa (T2b); T3, the tumor has advanced through to the subserosal tissue.
c N (Nodes): Regional lymph node involvement: N0, no indication of cancer in the surrounding lymph nodes; N1, cancer has reached one or two nearby lymph nodes; N2, three to six regional lymph nodes are affected by cancer; N3, cancer has spread to seven or more nearby lymph nodes, with the extent varying based on specific staging criteria.
d M (Metastasis): M0, there is no indication that the cancer has spread to distant organs; M1, the cancer has extended to distant locations in the body, such as the lungs, liver, or abdominal lining.
3.2. Procedure for Extracting RNA
3.3. Procedure for Synthesizing Complementary DNA
3.4. Quantitative Assessment of Gene Expression with Real-time PCR
| Gene Names | Seq (5-3) | TM | GC% |
|---|---|---|---|
| circPVT1 F | TTCCTGGTGAAGCATCTG | 54.14 | 50 |
| circPVT1 R | GCACAGCCATCTTGAGG | 55.15 | 58.82 |
| MiR-203a-3p stem loop | GTCGTATCCAGTGCAGGGTCCGAGGTATT; CGCACTGGATCGATACGACCTAGTGG | 79.87 | 56.86 |
| Has-mir-203a-3p | AATCGGCGGTGAAATGTTTAG | 55.92 | 42.85 |
| GAPDH F | AAGGCTGTGGGCAAGGTCATC | 61.78 | 57.14 |
| GAPDH R | GCGTCAAAGGTGGAGGAGTGG | 63.73 | 61.90 |
| U6 F | GCTCGCTTCGGCAGCACATATAC | 64.21 | 56.52 |
| U6 R | CGAATTTGCGTGTCATCCTTGCG | 62.43 | 52.17 |
Abbreviations: Tm, melting temperature; GC, gastric cancer.
3.5. BLAST Alignment Results for circPVT1 Primers
| Primers | Sequence (5´-3´) | Length | Tm | GC% | Self Complementarity | Self 3´ Self Complementarity |
|---|---|---|---|---|---|---|
| Forward | TTCCTGGTGAAGCATCTG | 18 | 54.14 | 50 | 4 | 2 |
| Reverse | GCACAGCCATCTTGAGG | 17 | 55.15 | 58.82 | 2 | 2 |
3.6. Real-time PCR Procedure
| Cycle Numbers and Step | Time | Temperature (ᵒC) |
|---|---|---|
| 1 | ||
| Initial denature | 15 min | 95 |
| 2 - 40 | ||
| Denaturation | 15 - 30 s | 95 |
| Annealing | 30 s | 59 |
| Extension | 30 s | 72 |
| Cycle Numbers and Step | Time | Temperature (ᵒC) |
|---|---|---|
| 1 | ||
| Initial denaturation | 15 min | 95 |
| 2 - 40 | ||
| Denaturation | 15 - 30 s | 95 |
| Annealing/extension | 60 s | 50.5 - 60 |






