Four genes of frdA, frdB, frdC and frdD were down-regulated by 3.1-fold, 3.4-fold, 3.2-fold and 3.3-fold, respectively. The frdA genus has been found to be up-regulated in the
M. tuberculosis in (
7) as well as in studies that investigated the behaviour of the
M. tuberculosis grown under carbon starvation (
8). Studies on the behaviour of Mycobacterium phlei found that fumarate reductase (FRD) activity increased fourfold when the bacteria were grown under the low-oxygen conditions (
9,
10). Fumarate reductase has reported to be a successful target in treatment of protozoan infections using a variety of compounds (
11).
Nitrate reductase is a membrane-bound molybdenum-containing complex (
12). Absorption of nitrogen into the mycobacterial metabolism is important for survival of
M. tuberculosis (
13). It is suggested that the narGHJI mediates nitrate absorption in
M. tuberculosis (
14).
The pks3 and mmpL10 genes were up-regulated by 3.9-fold and 4.0-fold, respectively. Suppression of papA3 gene expression from the
M. tuberculosis resulted in loss of penta-acylated trehalose (PAT) (
15-
17). Pks3 is a polyketide synthase that is included in PAT biosynthesis of
M. tuberculosis (
18-
20).
The rpsH and rpsS genes were up-regulated by 3.5-fold and 3.3-fold, respectively. Initiation factor infC was up-regulated by 3.7-fold and the transcription level of gene rho was also elevated by 3.4-fold. A work indicated that Clostridium difficile challenge to several concentrations of antibiotics resulted in a general up-regulation of translation machinery (
21,
22).
L-arginine metabolism has indicated to be important for the
M. tuberculosis (
23). Some genes such as argR, argJ, argG, argF and argD were inhibited by 3.5-fold, 3.2-fold, 3.1-fold, 3.1-fold and 3.4-fold, respectively. Suppression of gene expression argR in Legionella pneumophila can affect gene transcript levels predicted to encode terminal steps of L-arginine biosynthesis (
24). In Listeria monocytogenes, mutation of argD led to a decreased replication rates in Caco-2 cells (
25). In
Corynebacterium glutamicum, genes encoding L-arginine biosynthesis proteins showed a decreased expression in ammonium-limited chemostat cultures (
26,
27).