Materials and methods
Materials
Fmoc-Arg(Pbf)-OH, Fmoc-Trp(Boc)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Lys(Boc)-OH, Fmoc-Asn(Trt)-OH, and Fmoc-Gly-OH were obtained from AAPPTec (Louisville, KY). The coupling agents including O-(benzotriazole-1-yl)-N, N, N′, N′-tetramethyluronium tetrafluoroborate (TBTU), Hydroxy/benzotriazole (HoBt) and N, N-Diisopropylethylamine (DIPEA), scavengers (ethanedithiol, phenol, and triisopropylsilane (TIS)), and cleavage reagents (piperidine and trifluoroacetic acid (TFA)) were purchased from Sigma (St. Louis, MO). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), RPMI 1640, fetal bovine serum (FBS), trypsin, ethylenediaminetetraacetic acid (EDTA), and penicillin/streptomycin were purchased from Invitrogen (Carlsbad, CA). Raji cell line was obtained from the Pasteur Institute, Tehran, Iran. All other organic reagents were of analytical grade and purchased from Sigma-Aldrich (St. Louis, MO, USA).
Peptide synthesis
Eight linear peptides, including W
4K
4, W
4R
4, [WK]
4, [WR]
4, WRNGRWR, WRNGR, NGRWR, and [R]
6 were synthesized by solid-phase synthesis (SPS) method on 2-chlorotrityl chloride (CTC) resin in a stepwise manner (
2). Fmoc-L-amino acids were coupled to the resin in the presence of coupling reagents using TBTU (2 equivalent), HoBt (2 equivalent), and DIPEA (2 equivalent) in N, N-dimethylformamide (DMF) after mixing for 2 h, followed by resin swelling. The Fmoc deprotection process was carried out by piperidine in DMF (20% v/v). After the sequence completion, the side chain deprotection and cleavage step were carried out using TFA/TIS/phenol/distilled water (88:2:5:5, v/v/v/v) for 2 h. In the end, the peptide-coupled resins were filtered, and the solvent was evaporated to obtain dry crude peptides.
Peptide-MTX conjugation
Regarding the carboxylic acid end groups of MTX molecules, the peptide-MTX conjugation process was similar to that explained for peptide synthesis (
28). Briefly, the obtained resin-coupled CPPs were conjugated to MTX (3 equivalent to the amount of resin), using DIPEA (2.5 equivalent), HoBt (2.5 equivalent), and TBTU (2.5 equivalent) to form peptide-MTX conjugates after 48 h under stirring. Then, the reaction completion was confirmed by the Kaiser test. Finally, the peptide-MTX conjugates were cleaved from the resin using TFA/TIS/phenol/distilled water (88:2:5:5, v/v/v/v) 2 h, precipitated in cold diethyl ether, and washed three times. The supernatant solution was analyzed at 365 nm using an ultraviolet-visible (UV-Vis) spectrophotometer (Shimadzu, Japan) to calculate the MTX loading efficiency according to the equation below:
Synthesis of peptide-E8 nanoparticles
First, 2.5 mg of the selected peptide (NGRWR, [WK]4 or [WK]4-MTX) was dissolved in 50 µL dimethyl sulfoxide (DMSO). Then poly-glutamate (E8) was added in a 1:5 ratio (peptide: E8) under ultrasonication for 2 h to form a salt bridge between peptide and E8 and create the nanoparticles. The obtained solution was filtered through a 0.2 μm syringe filter and lyophilized.
Characterization
The size and morphology of NGRWR peptide and NGRWR-E8 nanoparticles (as representatives) were examined by scanning electron microscopy (SEM, Mira3 FEG-SEM Tescan 5.0 kV). Samples were prepared by drop-casting of a 5 mM aqueous solution (20 µL) onto the mica surface. Then, they were lyophilized, coated with gold, and analyzed with a high volume mode of SEM. Zetasizer Nano ZS (Malvern Instruments, Worcestershire, UK) was employed to examine the mean hydrodynamic diameter, size distribution, and zeta potential of NGRWR peptide and NGRWR-E8 nanoparticles. To this end, the samples were diluted in distilled water (pH 7.4), and the experiment was repeated three times per sample at 25 °C.
Cell culture and MTT assay
Human lymphoma cell line (Raji) was cultured in 75 cm
2 cell culture flasks containing RPMI 1640 medium (Gibco), which was supplemented with 10% FBS, 2 mM L-glutamine, 100 units/mL penicillin, and 100 µg/mL streptomycin (
29). The cell culture was carried out in a humidified atmosphere of 5% CO
2, 95% air, and 37 °C. The cell viability of CPPs and peptide-MTX conjugates was determined by MTT assay in Raji cells. Hence, 4 × 10
4 Raji cells/well were seeded into a 96-well plate and cultured in the condition mentioned above for 24 h. Then, cells were treated with different CPPs including W
4K
4, W
4R
4, [WK]
4, [WR]
4, WRNGRWR, WRNGR, NGRWR, and [R]
6 (5, 10, 25 and 50 mM) and peptide-MTX conjugates (25 and 50 nM of MTX) for 24, 48 and 72 h. The cell viability was determined by measuring the amount of MTT transformed to formazan salt using an ELISA reader at 570 nm (Bioteck Instruments, Winooski, VT, USA). The results were the means of three independent experiments performed in duplicate.
Immunosorbent assay
Cells were incubated with selected CPPs (5 µM), their conjugations with MTX (25 nM of MTX), [WK]4-E8 nanoparticles (5 µM), [WK]4-MTX-E8 nanoparticles (25 nM of MTX), and free MTX (25 nM) for 48 h. As a positive control, cells were incubated with 10 μg/mL of lipopolysaccharide (LPS) to induce IL-6 and TNF-α release. Then, the supernatant was collected and IL-6 and TNF-α secretion was evaluated using standard ELISA kits.
Statistical analysis
Statistical analysis was performed by GraphPad Prism v6.07 (Graph Pad Software, CA, USA). In the cytotoxicity and immunogenicity studies, one-way ANOVA was employed, followed by a multi-comparison test, where p < 0.05 was quoted as significance.