Chemical
2,7-Dichlorofluorescein diacetate (DCHF-DA), rhodamine 123 (Rh 123), and caspase-3 assay kit were purchased from Sigma Chemical Co (St. Louis, MO), and cytochrome c assay kit (was purchased from R and D Systems, Inc. (Minneapolis, MN). In addition, all other chemicals were of the highest commercial grade available.
Animals
The RB rat model and normal rat were purchased from the Institute Pasteur (Tehran, Iran). Rats were kept in a temperature-controlled environment on a 12:12 h light/dark cycle. All investigations were performed according to the guidelines of ethical standards and the Institutional Animal Care and Use Committee (IACUC) of Shahid Beheshti University of Medical Sciences in Tehran, Iran.
Cells and mitochondria isolation
Rats with RB were euthanized. Then, one eye was removed and 1 × 10
6 cells were dispersed and maintained in culture medium (RPMI 1640 medium containing 11.1 mmol/L glucose, 50 μmol/L β-mercaptoethanol, 1.0 mmol/L sodium pyruvate, 2.0 mmol/L L-glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin, and 10% fetal bovine serum (Gibco, MD, USA)). For mitochondrial isolation, rat retinoblastoma cells were washed twice in mitochondrial extraction buffer (HEPES 10 mM, mannitol 200 mM, sucrose 70 mM, EGTA 1 mM, and pH 7.5) and then were resuspended in 10 vol extraction buffer (Mitochondrial Isolation Kit; Sigma). Rat retinoblastoma cells were homogenized and then nuclei and intact cells were removed via centrifugation at 600
×g for 5 min. In the next step, the supernatant was centrifuged at 11,000 ×
g for 10 min. Then, the pellet was resuspended in a 10 vol extraction buffer, and centrifugation was performed in two steps (600
×g and 11,000 ×
g, respectively). Finally, the mitochondrial fraction (final pellet) was resuspended in assay buffer (MOPS 20 mM, KCl 110 mM, ATP 10 mM, MgCl
210 mM, sodium succinate 10 mM, EGTA 1 mM, and pH 7.5) and was stored for short periods on ice until the further investigation (
26,
27).
Furthermore, for the normalization of the mitochondrial samples in all experiments, the same mitochondrial protein concentration for each sample (0.5 mg mitochondrial protein/mL) was used. In this study, mitochondrial function following their extraction was checked by the MTT test (for evaluation of mitochondrial function, mitochondrial complex II activity was determined). The mitochondrial membrane integrity was checked by the cytochrome c oxidase (complex IV) assay kit following their initial extraction.
Cold Atmospheric Plasma (CAP) treatment
The plasma device used in this study is an atmospheric pressure plasma argon plasma jet. The device made at the University of Iran Science and Technology includes a 1.5 mm diameter central copper pin electrode inside a glass tube (Pyrex) connected to a high voltage resonant transformer and outer aluminum electrode wrapped around it. The inner and outer diameter of the glass tube was 5 mm and 8 mm, respectively. The output voltage and the frequency was 4 kV and ~ 40 kHz, respectively. In this work, the feeding gas was 99.999% pure Argon (Ar) with a 10 L/min gas flow rate. The electrical circuit includes a power supply, an electrode (aluminum and copper), interface wires, and an oscilloscope. The electrodes are centered and axially symmetrical. The central HV electrode is a 1.5 mm diameter copper rod and a cylindrical and aluminum-coated electrode. In the production and stability of the plasma created by the electric field, the production of secondary electrons plays an essential role. Secondary electrons, in fact, are electrons emitted from the metal cathode level, which are formed by the impact of high-energy ions and atoms. This process is characterized by a parameter called the secondary electron emission coefficient and the cathode genus used in this parameter. According to studies, the metal is suitable for use as a cathode, which, in addition to the high electron emission factor, is also low.
For this reason, aluminum has been used in this study because of its high secondary electron emission coefficient and the low rate of sputtering as a cathode. Electrode HV was copper. Argon gas is transferred to the plasma jet cylinder from the capsule by a 6 mm pneumatic hose, but before entering the cylinder, the gas is entered into the flowmeter and controlled by the flowmeter to control the flow and velocity. In this study, a KT800-6 glass flowmeter with the ability to measure 100-1000 liters per hour with a precision of 40 liters per hour was used to control and measure the flow rate of gas. Also, the distance between the two electrodes and the pressure was 6.5 mm and 760 Torr, respectively. In order to have a stable plasma, an alternating sinusoidal voltage source, together with a transformer, was used as an amplifier. To use plasma for isolated mitochondria, it was necessary to test the power supply at different voltages and frequencies. Finally, the best mode for producing an ideal and uniform plasma was the output voltage of 4 kV and the frequency of 40 kHz, which was measured with an oscilloscope. Also, the gas pressure used in experiments at 600 L/h was about 10 liters per minute. By increasing gas pressure, the length of the plasma can be changed. Also, the nozzle distance from the 96-well plate was about 12 mm. This distance is almost ideal because as the distance increases, the plasma effect decreases, and also by decreasing the distance, in addition to the gas pressure causing the particles to disperse, also causes the arc, especially at a distance of less than 8 mm and this is due to the conductivity of the sample and the increase of the instantaneous electric current. The discharge is ignited inside a dielectric tube within a gap between two electrodes. The inner and outer diameter of the dielectric tube was 5 mm and 8 mm, respectively.
The distance from the tip of the nozzle of the plasma jet and the sample was exactly 20.25 mm. The time durations for plasma treatment were 30, 60, and 120 sec (
Figures 1A and 1B). Our time for mitochondrial retinoblastoma treatment was 30, 60, and 120 sec. According to Cheng
et al., We calculated the dose of plasma from 𝐷~𝑄∗𝑉∗T , where D is the entire “plasma dosage” applied to mitochondria; Q is the flow rate of the feeding gas, V is the output voltage and T is the treatment time (
14). The scheme and characteristics of the CAP are shown in
Figures 1A and 1B and
Table 1, respectively. Finally, the dose of 200, 400, 800, 1200, 2400, 2800, 3600, and 4800 a.u. of CAP were used to evaluate succinate dehydrogenase (SDH) activity assay. The dose used in the other experiments were selected based on the SDH activity assay.
Mitochondrial assay
Evaluation of Succinate Dehydrogenase (SDH) activity
In this study, MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) probe was used to assess the effects of CAP (200, 400, 800, 1200, 2400, 2800, 3600 and 4800 a.u.) on mitochondrial SDH activity. The mitochondria were isolated and exposed to various doses of the CAP (200, 400, 800, 1200, 2400, 2800, 3600, and 4800 a.u.) for 1 h at 37 °C. To assess the mitochondrial SDH activity, the MTT dye was added to the medium and incubation was done for 30 min (37 °C). Dimethyl sulfoxide (DMSO) shas been used to dissolve formazan crystals. Finally, the absorbance was assayed using an ELISA reader (Tecan, Rainbow Thermo, Austria) at 570 nm (
28).
ROS level assay
The 2′, 7′-dichlorodihydrofluorescein diacetate (DCFH-DA) probe was used to measure the effects of CAP at the dose of 1200, 2400, and 4800 a.u for on ROS generation. At first, the mitochondria isolated from retinoblastoma and normal groups were exposed to cold plasma (1200, 2400, and 4800 a.u) for 1 h at 37 °C. In the following, the DCFH-DA probe was added to the medium and incubated at 37 °C for 1 h. Then, the fluorescence intensity (DCF) was measured using a fluorescence spectrophotometer (Shimadzu RF5000U) (λ
ex = 495 nm, and λ
em= 530 nm) (
29).
Mitochondrial Membrane Potential (MMP) assay
The rhodamine 123 (Rh 123) probe was used to evaluate the effects of cold plasma (1200, 2400, and 4800 a.u) on MMP collapse. At first, the mitochondria isolated from retinoblastoma and normal groups were exposed to CAP (1200, 2400, and 4800 a.u) for 1 h at 37 °C. In the following, the DCFH-DA probe was added to the medium and incubated at 37 °C for 1 h. Then, the fluorescence intensity (Rh 123) was measured using a fluorescence spectrophotometer (Shimadzu RF5000U) (λ
ex = 470 nm, and λ
em= 540 nm) (
30).
Mitochondrial swelling assay
Briefly, isolated mitochondria from retinoblastoma and normal groups were suspended in swelling assay buffer. In the next step, the mitochondrial suspension was incubated with 1200, 2400, and 4800 a.u of CAP for 1 h. Finally, absorbance was measured at 540 nm using an ELISA reader (Tecan, Rainbow Thermo, Austria). The decrease in absorbance at 540 nm indicates a swelling in the mitochondria.
Cytochrome c release
Briefly, the Quantikine Rat/Mouse Cytochrome c Immunoassay kit (R and D Systems, Inc., Minneapolis, MN, USA) was used for the determination of cytochrome c release. In this test, a specific monoclonal antibody was pre-coated onto the micro-plate, and then conjugate (75 mL), standard solution, and positive control (50 mL) were added to each well of the micro-plate. Then, we added the protein (1 mg) from each supernatant fraction to the sample wells. In the next step, standards, controls, and samples were added to two wells of the micro-plate. Then, the substrate solution (100 mL) was added to each well and incubated for 30 min, and the stop solution (100 mL) was then added to each well. Finally, the optical density was evaluated at a wavelength of 450 nm.
Cellular assay
Cell viability assay
MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) probe was used to assess the effects of CAP (250, 500, 1000, 1200, 2000, 3000, and 4000 a.u.) on RB cells viability. The RB cells were isolated and exposed to various doses of the CAP (250, 500, 1000, 1200, 2000, 3000, and 4000 a.u.) and maintained in a culture medium (RPMI 1640). To assess the RB cells viability, the MTT dye was added to the medium and incubation was done for 30 min (37 °C). Dimethyl sulfoxide (DMSO) has been used to dissolve formazan crystals. Finally, the absorbance was assayed using an ELISA reader (Tecan, Rainbow Thermo, Austria) at 570 nm (
32).
Lipid Peroxidation (LPO) content assay
The Malondialdehyde (MDA) level was measured to assess lipid peroxidation (LPO). The level of MDA formed in each of the samples was evaluated by measuring the absorbance of the supernatant at 532 nm with an ELISA reader (Tecan, Rainbow Thermo, Austria). MDA content was expressed as µg/mg protein (
33).
Glutathione (GSH) content assay
For this test, the 0.5 mL of TCA 10% was added to the cell and then centrifuged at 11,000 RPM for 2 min; for GSH and glutathione disulfide (GSSG) assay, 0.5 mL of supernatant were diluted by the addition of 4.5 mL phosphate-EDTA buffer. One-hundred microliter of diluted supernatant was added to 2.8 mL phosphate-EDTA buffer and 100 µL of the OPT solution. After incubation for 15 min at room temperature, each sample was measured for GSH and GSSG level in quartz cuvettes using the Shimadzu RF-5000 U fluorescence spectrophotometer (λex = 350 nm, and λem = 420 nm).
Caspase-3 activity assay
Caspase-3 activity was evaluated using the Sigma Caspase-3 assay kit (Sigma-Aldrich, Taufkirchen, Germany). This assay is based on the hydrolysis of substrate peptide (Ac-DEVD-pNA) by caspase-3. Then, the released p-nitroaniline has a high absorbance at 405 nm. Finally, the concentration of the p-nitroaniline (mM) released from the substrate is evaluated from the absorbance wavelength at 405 nm (
34).
Lysosomal membrane integrity assay
In this study, acridine orange, a fluorescent dye, was used to evaluate lysosomal membrane damage via CAP (1000, 2000, and 4000 a.u) in the RB cells (10
6 cells). After the exposure to CAP for 1 h at 37 °C, acridine orange redistribution in the cell suspension (10
6 cells) was assayed using a Shimadzu RF5000U fluorescence spectrophotometer (λ
ex = 495 nm and λ
em = 530 nm) (
35,
36).
Statistical analysis
The data were shown as the means ± standard deviation (SD). The one-way ANOVA analysis (GraphPad Prism software, version 5) was used to determine differences between the mean values. P < 0.05 was considered to display a statistically significant difference. All experiments were analyzed using one-way analysis of variance (ANOVA) followed by the Tukey-test.