Chemistry
All of the prepared ligands were characterized using thin layer chromatography followed by FT-IR, Mass, elemental analysis and H-NMR. Melting points were firmed using a Thomas- Hoover capillary apparatus and were uncorrected. 1HNMR spectra were recorded on a Bruker FT-250 spectrometer TMS was used as an internal standard. Infrared spectra were acquired on a Nicolet 550-FT spectrometer. Mass spectra were measured with a Finnigan TSQ-70 spectrometer (Finnigan Mat, Bremen, Germany). Elemental analysis was done using a Perkin-Elmer model 240-C apparatus. The results of elemental analysis (C, H, and N) were within ± 0.4% of the calculated amounts. Reagents and solvents were prepared from MERCK (Darmstadt, Germany). DHPs 3a-f (
Table 1.) were produced using Hantzsch condensation (
30,
31) in which 4(5)-chloro-2-ethylimidazole-5(4)-carboxaldehyde 2 was condensed with N-arylacetoacetamide 1a-f and ammonium acetate in methanol (
Figure 1). The compound 2 could be prepared in three-step from propionaldehyde, dihydroxyacetone and ammonia 5 3-oxo-N-aryl butanamide 1a-f was produced according to modified Clemens method33 by condensation of 2, 2, 6-trimethyl-1, 3-dioxin-4-one with the appropriate arylamine.
General procedure for the preparation of 3-oxo-N-aryl butanamide (1a-g)
A solution of an appropriate arylamine and 2, 2, 6-trimethyl-1, 3-dioxin-4-one in xylene was placed in an Erlenmeyer flask. The flask was immersed in an oil bath that had been preheated to 150 °C, and the solution was vigorously stirred. The evolution of acetone became apparent within several minutes and heating was continued for 3-4 h. The xylene was then removed, and the product was filtered and recrystallized from appropriate organic solvents.
N-(4-fluorophenyl)-3-oxobutanamide (1a)
Using the general procedure and 4-fluoroaniline provided the title compound after 3 h of reflux: White crystals (from chloroform and petroleum ether; 1:1), Yield 88%, mp 98-101 °C. IR (KBr): ν 3315(NH), 1716, 1671 cm−1 (CO). 1H-NMR (CDCl3): δ (ppm) 2.29 (s, 3H, CH3), 3.70 (s, 2H, CH2), 7.15-7.25 (m, 2H, H-3, 5-phenyl), 7.56-7.78 (m, 2H, H-2, 6-phenyl), 9.40 (brs, 1H, NH).
N-(4-chlorophenyl)-3-oxobutanamide (1b)
Using the general procedure and 4-chloroaniline provided the title compound after 3 h of reflux: White crystals (from chloroform and petroleum ether; 1:1), Yield 79%, mp 127-129 °C. IR (KBr): ν 3300(NH), 1720, 1670 cm−1 (CO). 1H-NMR (CDCl3): δ (ppm) 2.30 (s, 3H, CH3), 3.58 (s, 2H, CH2), 7.23 (d, J=8 Hz, 2H, H-3,5-phenyl), 7.50 (d, J=8 Hz, 2H, H-2,6-phenyl), 9.37 (s, 1H, NH).
N-(3, 4-dichlorophenyl)-3-oxobutanamide (1c)
Using the general procedure and 3, 4-dichloroaniline provided the title compound after 4 h of reflux: White crystals (from chloroform and petroleum ether; 1:1), Yield 65%, mp 79-81 °C. IR (KBr): ν 3378(NH), 1710, 1665 cm−1 (CO). 1H-NMR (CDCl3): δ (ppm) 2.39 (s, 3H, CH3), 3.65 (s, 2H, CH2), 7.30-7.47 (m, 2H, H-5, 6-phenyl), 8.05 (s, 1H, H-2-phenyl), 9.45 (brs, 1H, NH).
N-(3-bromophenyl)-3-oxobutanamide (1d)
Using the general procedure and 3-bromoaniline provided the title compound after 3 h of reflux: Light yellow crystals (from chloroform and petroleum ether; 1:1), Yield 80%, mp 98-101 °C. IR (KBr): ν 3300(NH), 1712, 1673 cm−1 (CO). 1H-NMR (CDCl3): δ (ppm) 2.29 (s, 3H, CH3), 3.54 (s, 2H, CH2), 7.18-7.45 (m, 3H, H-4, 5, 6-phenyl), 7.78 (s, 1H, H-2-phenyl), 9.25 (brs, 1H, NH).
N-(2-nitrophenyl)-3-oxobutanamide (1e)
Using the general procedure and 2-nitroaniline provided the title compound after 4 h of reflux: Yellow crystals (from petroleum ether), Yield 70%, mp 142-143 °C. IR (KBr): ν 3180 (NH), 1716 (CO), 1350 and 1550cm−1 NO2. 1H-NMR (DMDO-d6): δ (ppm) 2.20 (s, 3H, CH3), 3.61 (s, 2H, CH2), 7.35 (m, 1H, H-4-phenyl), 7.73 (d, J=4 Hz, 2H, H-5,6-phenyl), 7.98 (d, J=8 Hz, 1H, H-3-phenyl), 10.50 (brs, 1H, NH).
N-(2, 4-dinitrophenyl)-3-oxobutanamide (1f)
Using the general procedure and 2,4-dinitroaniline provided the title compound after 4 h of reflux: Yellow crystals (from petroleum ether), Yield 68%, mp 162-165 °C. IR (KBr): ν 3300 (NH), 1726 (CO), 1350 and 1550cm−1 NO2. 1H-NMR (DMDO-d6): δ (ppm) 2.17 (s, 3H, CH3), 3.51 (s, 2H, CH2), 8.01 (d, J-9.6Hz, 1H, H-6-phenyl), 8.52 (dd, J=9.6, 3.2 Hz, 1H, H-5-phenyl), 8.70 (d, J=3.2 Hz, 1H, H-3-phenyl), 10.71 (brs, 1H, NH).
General procedure for preparation of diaryl 4-(4(5)-chloro-1H-imidazol-5 (4)-yl)-2, 6-dimethyl-1, 4-dihydropyridine-3, 5-di- carboxamide (3a-f)
A light protected solution of compound 2 (1 mmol), ammonium acetate (1 mmol), and compounds 1a-f (2 mmol) in methanol (2.5 mL) was refluxed. The reaction mixture was cooled to room temperature, filtered and recrystallized from diethyl ether to give the title compounds.
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (4-fluorophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3a)
Using the general procedure and compound 1a provided the title compound after 24 h of reflux: white crystals, yield 56%; mp 240-247 oC. IR (KBr): ν (cm−1) 3221 (NH), 1680, 1649(CO).; 1H-NMR (DMSO- d6): δ (ppm) 1.10 (t, J = 7.34 Hz, 3H, CH3CH2-), 2.09 (s, 6H, CH3-2,6-DHP), 2.48 (m, 2H, CH3CH2-), 5.12 (s, 1H, H-4-DHP), 7.10 (dd, J = 8.80, 8.96 Hz, 4H, H-3ʹ,5ʹ-phenyl), 7.49-7.67 (m, 4H, H-2ʹ,6ʹ-phenyl), 8.23 (s, 1H, HN-DHP), 9.23 (s, 2H, NH-amides), 11.36 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 511(M+, 5), 509.3(6), 473.2(100), 404.3(22), 401.3(74), 365(45), 334.7(23), 271.1(47), 259.7(36), 158.7(21), 131.8(30), 129.8(37). Molecular Formula = C26H24ClF2N5O2; Calculated = C(61.00%) H(4.73%) N(13.68%), Found = C(61.05%) H(4.74%) N(13.70%).
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (4-chlorophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3b)
Using the general procedure and compound 1b provided the title compound after 24 h of reflux: White crystals, yield 58.5%; mp 249.5-252.2 oC. IR (KBr): ν (cm−1) 3226 (NH), 1680, 1634 (CO). 1H-NMR (DMSO- d6): δ (ppm) 1.10 (t, J = 7.5Hz, 3H, CH3CH2-), 2.10 (s, 6H, CH3-2,6-DHP), 2.49 (m, 2H, CH3CH2-), 5.10 (s, 1H, H-4-DHP), 7.28 (d, J = 8.55 Hz, 4H, H-3ʹ,5ʹ-phenyl), 7.59 (d, J = 8.90Hz, 4H, H-2ʹ,6ʹ-phenyl), 8.39 (s, 1H, NH-DHP), 9.08 (s, 2H, NH-
amides), 11.32 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 544(M+, 4), 510.1(30), 505.8(39), 436(23), 417(80), 380.7(100), 378.5(44), 286.9(29), 262.1(15), 154.9(8), 152.8(14), 127(22), 98.8(16). Molecular Formula = C26H24Cl3N5O2; Calculated = C(57.31%) H(4.44%) N(12.85%) , Found = C(57.39%) H(4.45%) N(12.83%).
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (3,4-dichlorophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3c)
Using the general procedure and compound 1c provided the title compound after 24 h of reflux: White crystals, yield 60.7%; mp 170.8-176.2 oC. IR (KBr): ν (cm−1) 3298, 3262 (NH), 1654 (CO). 1H-NMR (DMSO- d6): δ (ppm) 1.08 (t, J = 7.33 Hz, 3H, CH3CH2-), 2.08 (s, 6H, CH3-2,6-DHP), 2.48 (m, 2H, CH3CH2-), 5.07 (s, 1H, H-4-DHP), 7.49 (s, 4H, H-5ʹ,6ʹ-phenyl), 7.97 (s, 2H, H-2ʹ-phenyl), 8.39 (s, 1H, NH-DHP), 9.48 (s, 2H, NH-amides), 11.32 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 612.9(M+, 11), 575.8(3), 480(21), 414.8(8), 389(13), 320.7(87), 260.9(41), 186.8(63), 123.7(73), 106.2(100), 79.7(42). Molecular Formula = C26H22Cl5N5O2; Calculated = C(50.88%) H(3.61%)N(11.41%), Found = C(50.91%) H(3.62%)N(11.43%).
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (3-bromophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3d)
Using the general procedure and compound 1d provided the title compound after 28 h of reflux: White crystals, yield 66%; mp 160.2-170.6 oC. IR (KBr): ν (cm−1) 3308, 3277 (NH), 1640, 1634 (CO). 1H-NMR (DMSO- d6): δ (ppm) 1.12 (t, J=7.55 Hz, 3H, CH3CH2-), 2.12 (s, 6H, CH3-2,6-DHP), 2.52 (m, 2H, CH3CH2-), 5.12 (s, 1H, H-4-DHP), 7.2-7.3 (m, 4H, H-4ʹ,5ʹ-phenyl), 7.5-7.6 (m, 2H, H-6ʹ-phenyl), 7.8 (s, 2H, H-2ʹ-phenyl), 8.3 (s, 1H, NH-DHP), 9.4 (s, 2H, NH-amides), 11.3 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 633(M+, 8), 598(15), 580(7), 504.6(23), 434.2(22), 333.1(31), 264.2(25), 235.9(37), 196.6(100), 132.1(78), 90.4(95). Molecular Formula = C26H24Br2ClN5O2; Calculated = C(49.27%) H(3.82%) N(11.05%), Found = C(49.24%) H(3.83%) N(11.03%).
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (2-nitrophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3e)
Using the general procedure and compound 1e provided the title compound after 32 h of reflux: Orange crystals, yield 68%; mp 180.1-190.2 oC. IR (KBr): ν (cm−1) 3359, 3231 (NH), 1644 (CO), 1347, 1495(NO2). 1H-NMR (DMSO- d6): δ (ppm) 1.12 (t, J = 7.6 Hz, 3H, CH3CH2-), 2.18 (s, 6H, CH3-2,6-DHP), 2.51 (m, 2H, CH3CH2-), 5.01 (s, 1H, H-4-DHP), 7.28 (t, J = 7.72 Hz, 2H, H-4ʹ-phenyl), 7.68 (t, J = 7.72 Hz, 2H, H-5ʹ-phenyl) 7.78 (d, J = 7.65 Hz, 2H, H-6ʹ-phenyl), 7.98 (d, J = 8.25 Hz, 2H, H-3ʹ-phenyl), 8.63 (s, 1H, NH-DHP), 9.89 (s, 2H, NH-amides), 11.38 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 565(M+, 7), 564.4(4), 528.1(10), 436.6 (22), 402(31), 400.4(85), 298.1(68), 232.7(100), 220.3(90), 164.4(65), 90(92), 63.3(92). Molecular Formula = C26H24ClN7O6; Calculated = C(55.18%) H(4.27%) N(17.32%), Found = C(55.23%) H(4.28%) N(17.34%).
4-(4(5)-chloro-2-ethyl-1H-imidazol-5(4)-yl)-2, 6-dimethyl-N3, N5-bis (2,4-dinitrophenyl)-1, 4-dihydropyridine-3, 5-dicarboxamide (3f)
Using the general procedure and compound 1f provided the title compound after 36 h of reflux: Yellow crystals, yield 62%; mp 139.5-143.3 oC. IR (KBr): ν (cm−1) 3339(NH), 1639, 1680 (CO), 1337, 1265 (NO2). 1H-NMR (DMSO- d6): δ (ppm) 1.10 (t, J = 7.55 Hz, 3H, CH3CH2-), 2.27 (s, 6H, CH3-2,6-DHP), 2.57 (m, 2H, CH3CH2-), 5.06 (s, 1H, H-4-DHP), 8.06 (d, J=9.18 Hz, 2H, H-6ʹ-phenyl), 8.51 (dd, J = 9.06, 2.3 Hz, 2H, H-5ʹ-phenyl), 8.70(d, J = 2.32 Hz, 2H, H-3ʹ-phenyl), 8.97 (s, 1H, NH-DHP), 10.40 (s, 2H, NH-amides), 11.41 (s, 1H, NH-imidazole).; Mass: m/z (rel.int.) 469.9(6), 342.7(21), 287.9(48), 260.9(23), 245.9(16), 180.9(42), 107.2(29), 91.1(50), 62.1(75). 52.3 (100). Molecular Formula = C26H22ClN9O10; Calculated = C(47.61%) H(3.38%) N(19.22%), Found = C(47.66%) H(3.39%) N(19.25%).
Computational studies
The chemical structure of desired DHPs 3a-f was built and optimized using HYPERCHEM software (version 7, Hypercube Inc.). Optimization of the compounds was performed through MM+ and PM3 methods and total energy gradient was calculated as a root mean square (RMS) value, until the RMS gradient was 0.01 Kcal mol-1. The optimized conformer was transferred to Gaussian software to calculation of HOMO, LUMO and partial atomic charge (Muliken) using RHF method and 3-21G basis set.
In-vitro evaluation of anti-mycobacterial activity
The test compounds 3a-f, were initially dissolved in DMSO to give a concentration of 1 or 2 mg/L. All wells of micro plates received 100 µL of freshly prepared Middle broke 7H9 medium (Himedia, India), except first column. 200 µL of distilled water was added to the first column of 96 well plates to minimize evaporation of the medium in the test wells during incubation. Then 100 µL of test compounds with desired concentrations (1000 or 2000 µL) were added to the wells of the first row (each concentration was assayed in duplicate) and serial dilution was made from the first row to the last. Microbial suspension of BCG (1173P2) (100 µL), which had been prepared with standard concentration of 0.5 McFarland and diluted with 1:10 proportion by the distilled water, was added to all test wells. Plates were then sealed and incubated for 4 days at 37 °C. After that 12 µL Tween 80 10% and 20µL Alamar blue 0.01% (Himedia, India) were added to each test well. The results were assessed after 24 and 48 h. A blue color was interpreted as no bacterial growth, and color change to pink was scored as bacterial growth. Wells with a well-defined pink color were scored as positive for growth. The MIC (minimum inhibitory concentration) was defined as the lowest drug concentration, which prevented a color change from blue to pink. Ethambutol (Irandaru, Tehran) were used as positive control and DMSO as negative control (
32).