The patient consented to research authorization for record review, and the study received approval from the institutional review board. A forty-five-year-old male, resident of Xiangshan County, Zhejiang province — a hilly region in southeast China — was bitten by ticks on the inner side of his right ankle while mowing grass on April 6, 2024. He developed generalized malaise, including chills, fever, and diarrhea, and presented to a local hospital on April 18. He was initially prescribed levofloxacin and returned home. On April 23, due to worsening symptoms, he was admitted to the Infection Department of Ningbo Yinzhou No. 2 Hospital.
The patient was previously healthy, with no history of hypertension, diabetes, or hematologic/oncologic disease. Upon admission, routine microbiological and virological examinations were performed. Results for common respiratory pathogens, including influenza viruses A and B, parainfluenza virus, respiratory syncytial virus, adenovirus, cytomegalovirus, Epstein-Barr virus, and bacteria such as Mycobacterium tuberculosis, were all negative. Blood and sputum cultures showed no evidence of bacterial or fungal growth, and serologic tests for parasites were negative.
On admission, the patient was alert with a body temperature of 37.9°C (ear temperature), heart rate of 80 beats per minute, respiratory rate of eighteen breaths per minute, blood pressure of 117/66 mmHg, and oxygen saturation (SpO
2) of 99% on room air. A dark red, round papular scab was observed on the medial aspect of the right ankle (
Figure 1). The remainder of the skin was intact, and the neurologic examination was unremarkable.
Bite mark on the medial ankle
Initial laboratory studies revealed leukocytopenia (white blood cell count: 2,700 cells/mm
3), thrombocytopenia (platelet count: 82,000 cells/mm
3), elevated C-reactive protein (CRP) level (11.2 mg/L), elevated aspartate aminotransferase (AST) level (407 U/L), elevated alanine aminotransferase (ALT) level (136 U/L), elevated creatine kinase (CK) level (14,897 U/L), elevated lactate dehydrogenase (LDH) level (1,168 U/L), acute renal insufficiency (serum creatinine: 192 μmol/L), elevated cardiac troponin I (0.072 ng/mL), and significantly increased ferritin (> 1,500 ng/mL). Results for the Widal test, cytomegalovirus-DNA, Epstein-Barr virus-DNA,
Mycoplasma pneumoniae-DNA, influenza A-RNA, influenza B-RNA, respiratory syncytial virus-RNA, rhinovirus-RNA, adenovirus-DNA, and COVID-19-RNA were negative. Hemorrhagic fever with renal syndrome antibodies and dengue fever antibodies were also negative. No
Plasmodium was found. Chest computed tomography (CT) revealed flocculent high-density shadows in both lungs (
Figure 2). Electrocardiogram and echocardiographic findings were normal.
Antifungal treatment regimen administered during the patient’s intensive care unit (ICU) admission
On April 25, the patient developed hand tremor, followed by a generalized tonic-clonic seizure and trismus. He was transferred to the intensive care unit (ICU) after endotracheal intubation. Due to these clinical manifestations, serum samples were sent to the Infectious Disease Diagnosis Laboratory of Ningbo City Center for Disease Control and Prevention for SFTSV analysis. Polymerase chain reaction (PCR) testing of cerebrospinal fluid (CSF) for SFTSV was weakly positive, and serum reverse transcription Polymerase chain reaction (RT-PCR) for SFTSV was positive, with a cycle threshold (Ct) value of 27 (
Figure 2). The CSF examination revealed CSF pressure of 18 cm H
2O, leukocyte count of 0/mm
3, erythrocyte count of 0/mm
3, protein concentration of 351 mg/L, LDH of 15 U/L, and glucose concentration of 4.82 mmol/L. Serum mNGS detected 3,244 RNA sequence reads with a relative abundance of 58.61% corresponding to SFTSV. The patient was thus diagnosed with SFTSV-associated encephalopathy.
Management included antiepileptic drugs, methylprednisolone (40 mg/day for three days), immunoglobulin (400 mg/kg/day for six days, totaling 180 g) to modulate the immune response, favipiravir as antiviral therapy, and doxycycline to address potential co-infection (given the possibility of
Rickettsia and
Borrelia burgdorferi sensu lato from ticks) (
5). Additionally, three sessions of therapeutic plasma exchange were performed. Platelets, LDH, CK, Ct values, AST, and ALT were monitored throughout the course and are depicted as curves in
Figure 2. Notably, LDH, AST, and ALT levels fluctuated on April 25, 26, and 27, coinciding with plasma exchange procedures.
On day three of admission, fiberoptic bronchoscopy revealed multiple white patches in the main bronchus, congested and edematous bronchial mucosa, and a small amount of adherent white mucous sputum. Sputum culture smear showed septate hyphae, suggestive of Aspergillus. The patient was started on voriconazole antifungal therapy.
On day seven of admission, the patient's oxygenation and circulation worsened and septic shock was suspected, accompanied by further respiratory decline. Veno-venous extracorporeal membrane oxygenation (V-V ECMO) was initiated. The same day, mNGS from serum and bronchoalveolar lavage fluid (BALF) confirmed
Aspergillus fumigatus infection. The antifungal regimen was adjusted to caspofungin in combination with isavuconazole. After six days, the patient was successfully weaned from V-V ECMO, with a decline in plasma viral load to undetectable levels (
Figure 2).
Following modification of the antifungal regimen, the patient’s respiratory status initially improved, with reduced oxygen requirements and gradual resolution of pulmonary infiltrates on follow-up CT performed on May 2. Serum inflammatory markers, including CRP and procalcitonin, declined, and both platelet and leukocyte counts normalized. However, around May 7, clinical deterioration recurred with renewed fever (38.5°C), increased oxygen demand, and rising CRP and LDH levels. Repeat imaging revealed new consolidations and cavitation in the left lower lobe, inconsistent with isolated aspergillosis. This prompted re-evaluation of the antifungal strategy and repeat mNGS, which subsequently identified Rhizopus microsporus.
Bronchoscopy was repeated, and on May 8, mNGS of BALF identified both A. fumigatus and R. microsporus (sequence count: 4,151; relative abundance: 3.07%). Initial bronchoscopic specimens and smears had shown only septate hyphae consistent with Aspergillus species; direct microscopy and culture for Mucorales were not initially performed due to predominance of Aspergillus on mNGS and culture, and rapid clinical deterioration. After detection of R. microsporus by mNGS, repeated bronchoscopy and BALF culture targeting Mucorales were performed, resulting in isolation and confirmation of R. microsporus, consistent with mNGS findings.
Later that evening, the patient developed a dark bloody clot in the airway after choking. Bedside bronchoscopy showed active bleeding in the basal segment of the left lower lobe and cast thrombosis of the main bronchial airway. Bronchial angiography revealed hyperplasia and tortuosity of the left lower lung bronchial artery, with a few abnormal staining foci. After bronchoscopic hemostasis failed, bilateral bronchial artery embolization (BAE) was performed. Liposomal amphotericin B was administered at 3 mg/kg/day, increasing to 5 mg/kg/day (
Figure 2). On May 11, emergency left lower lobectomy was performed for severe hemoptysis (Figure 1 in Supplementary File). Simultaneously,
R. microsporus was detected in BALF culture (Figure 2 in Supplementary File), confirming previous mNGS results.
The patient’s consciousness gradually returned to normal, and a head MRI scan was completed (Figure 3 in Supplementary File). He was subsequently transferred to the Infection Unit for rehabilitation. The patient received five weeks of amphotericin B liposome followed by oral isavuconazole (200 mg once daily) until complete radiological resolution was achieved on follow-up chest CT. The clinical progression and treatments are summarized in
Figure 2. Surgical pathology revealed two types of fungal hyphae: Narrow, septate, acute-angle branching hyphae consistent with Aspergillus species, and broad, ribbon-like, sparsely septate hyphae with right-angle branching characteristic of Rhizopus species. These features confirmed coexistence of Aspergillus and Mucorales infection, as annotated in Figure 4 in Supplementary File.
On day ten of admission, despite combined antifungal therapy targeting
Aspergillus (caspofungin plus isavuconazole), fever persisted and oxygenation worsened. Follow-up CT showed progressive left lower lobe consolidation and new cavitation inconsistent with typical invasive aspergillosis alone. Laboratory assessment revealed rising serum β-D-glucan and persistently elevated inflammatory markers, while galactomannan did not further increase. These atypical findings, in combination with worsening hemoptysis and lack of improvement on anti-
Aspergillus therapy, raised suspicion for mucormycosis. Consequently, repeat mNGS of BALF confirmed
R. microsporus sequences. A detailed timeline of the patient’s clinical course, diagnostics, and interventions is presented in
Figure 3.
Timeline summarizing the patient’s clinical course, diagnostic findings, and treatments – the figure illustrates the sequence of key clinical events, including the onset of severe fever with thrombocytopenia syndrome (SFTS), respiratory deterioration requiring extracorporeal membrane oxygenation (ECMO), detection of Aspergillus fumigatus and Rhizopus microsporus, antifungal therapy adjustments, and surgical interventions [bronchial artery embolization (BAE) and lobectomy].