2.1. MitomiRS
Mitochondria are organelles indisputably involved in the heart of the aging process (
15). A large body of evidence indicates that dysfunctional organelles (mainly mitochondria) and their defective disposal can start inflammation inside the cells. The decreases of autophagic clearance have effects on mitochondrial dynamics (fusion and fission), eventually causing inflammation (
6,
16,
17).
As mentioned before, mitomiRs, the mitochondrial-located miRNAs, are involved in crucial biological processes like proliferation, apoptosis, mitochondrial metabolism, mitochondrial dynamics (fusion, fission, and mitophagy), inflammation, and aging (
9).
Interestingly, mitomiRs show organelle, cell, and tissue-specific functions depending on their cellular metabolic demand, origin, and microenvironment. These miRNA can be sensitive to the changing microenvironment and respond dynamically (
18).
miRNAs that are implicated in apoptosis include miR-1, 7, 15b, 16, 125b, 143, 145, 214, 24, 181, 221/222, 326, 491, and 497. miRNAs that are associated with mitochondrial metabolism are miR-15b, 16, 195, 133a, b-1, 210, 378, 424, and so on. miRNAs 27, 30, 106-b, 532, 181c, 484, 499, and 761, among the other, are involved in mitochondrial dynamics (
9,
19,
20).
Let-7b, miR-19b, miR-20a, miR-34a, miR-106a, miR-133b, miR-146a, miR-181a, and miR-221 have roles in altering the mitochondrial function, affecting inflammaging. MiR-19b and miR-20a are the most down-regulated miRs in different aging cells. Transcription of the CDK inhibitor p21 is correlated with down-regulation of miR-19b and miR-20a. MiR-20a also modulates the macrophage inflammatory response in leukocytes. MiR-146a is up-regulated in aging cells and controls the expression of IRAK-1 and TRAF-6, which are inflammation mediators. MiR-181a up-regulation is adequate for inducing the cell senescence. miR-34a suppresses SIRT1. SIRT1 has been reported to be involved in the regulation of diverse biological processes, including mitochondrial biogenesis, inflammation, and cell senescence and miR-133b targets glutathione-S-transferase p1. MiR-106a inhibits cell survival by down-regulating Mcl-1(which encodes an anti-apoptotic protein). MiR-221/222 regulates cell growth and cell cycle progression by targeting p27 and p57. In addition, mitomiRs like miR-328, 494, 513, and 638 have roles in mitochondrial hemostasis. Others like Let-7b, let-7g, miR-107, 221, and 320a are involved in different signaling pathways (
5,
14,
21-
23).
2.2. SA-miRs
The senescence, as previously mentioned, is a state in which normal cells divide for a finite number of times before they terminate propagation indefinitely although they are metabolically active (
24).
There are two models of senescence: Replicative senescence in which cells proliferate until their telomeres become critically short and consequently they are terminally arrested, and premature senescence or stress-inducible senescence that are caused by exposing cells to stress like oxidants, toxins, radiation, and so on.
MiRNAs are involved in senescence through three pathways:
1. p53/p21 senescence pathway
2. p16/RB senescence pathway
3. Senescence-associated secretory phenotype (SASP)
A large number of miRs can control the expression levels of protein components in the three senescence pathways. They can influence senescence by modulating the abundance of key senescence regulatory proteins (
12).
The most important SA-miRs in the p53/p21 pathway that can regulate the expression of genes like MDM2, p53, TERT, p21, MYC, MCD1, and SIRT1 will be focused. MDM2, which is a ubiquitin ligase suppressing p53, is post-transcriptionally controlled by miR-192, 194, 215, and 605. MiRNAs like 125b, 504, 25, and 30d suppress p53 protein levels. Telomerase reverse transcriptase expression, which is crucial for maintaining telomere length, is regulated by miR-195.
Several miRNAs can suppress the p21 expression and therefore can affect cell senescence including MiR-130b, miR-302 family (a, b, c, d), miR-106b, 19b, 20a, 208,519 family (a, b, c), and miR-29c-3p.
MYC is an oncoprotein that represses the p21 expression, thus modulating apoptotic response. Several miRNAs target the MYC expression like miR-34a, miR-429, miR-33b, miR-126, miR-136, miR-145, miR-449c, and let-7. The MCD1 (mediator of DNA damage checkpoint 1) controls the p53 expression. An increase in miR-22 could down-regulate MCD1 and bring about senescence. The SIRT1 (silent mating type information regulation 2 homologue 1) is a deacetylase that can modulate the metabolic activity in cellular stress. Deacetylation of p53 gene by SIRT1 represses the transcriptional induction of p21 expression. Up-regulation of miRNA 34a, 22, 138, 181a, and 217 reduces the SIRT1 expression.
The SA-miRNA is associated with p16/RB with some influences directly on the p16 expression like miR-24, 141, 300, 514 and 663 while other miRs in this group like 9, 26b, 29, 30, 141, 181, 210, 424, 138, 203, 205, 449a, etc. act upstream to modulate the p16 expression.
The SA-miRs in the SASP group include miRs that are involved in the secretion of growth factors, cytokines, and proteases. The most important members of this group are miR-146a and b (modulated IRAK1, TLR-8 expression), miR-9 (IL-6), miR-222 (MMP1), and miR-187 (TNF, IL6) (
12,
24).
2.3. Inflamma-miRs
It has been widely shown that several miRNAs are implicated in inflammation. In normal condition, the transcription of inflamma-miRs is at the baseline level. However, the initiation of proinflammatory TLR signaling instantly gives rise to strong co-induction of their expression through a mechanism that is largely NF-κB-dependent. In fact, the consequent inflammaging results from the up-regulation of these miRs. Inflamma-miRs are categorized into two groups:
1. Cellular inflamma-miRs that modulate the proinflammatory response at the cell level like miR-9, 19b, 20a, 21, 29a, 125a, 125b, 126, 146a, 155, 195, 199a, 517a, 517c, and let-7. Most of the cellular inflamma-miRs are involved in TLR signaling as mentioned before and these miRs affect the responsiveness of inflammatory cells (monocytes, neutrophils, endothelial, macrophages, dendritic and immune cells, and fibroblasts) and the activation of pro-inflammatory pathways like NF-κB (by miR-9), TLR-4 (let-7), VCAM-1 (by miR-126), IRAK-1 (by miR-146a and miR-146b), IL-1α (miR-181a), and TNF-α (miR187).
2. The circulating inflamma-miRs that are cellular inflamma-miRs modulated in plasma/serum samples in different physiopathological conditions like miR-9, 21, 29a, 126, 146, and155, which are up-regulated in age-related diseases. A mounting body of evidence has documented that these miRs are found within exosomes, in which they are transported outside the cell where they can be taken up by neighboring cells. Therefore, they act in a paracrine manner or alternatively, they enter the blood circulation and act as hormones by provoking a systemic response (
13,
25).