https://doi.org/10.5812/ijcm.84234

Meta-Analysis of Association Between BRIP1 Polymorphisms and Breast Cancer Risk

authors:

avatar Ali Dianatpour ORCID 1 , avatar Sepideh Faramarzi 1 , avatar Soudeh Ghafouri-Fard ORCID 1 , *

Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
International Journal of Cancer Management: Vol.12, issue 1; e84234
published online: January 8, 2019
article type: Systematic Review
received: September 13, 2018
revised: December 26, 2018
accepted: December 26, 2018

How To Cite Dianatpour A, Faramarzi S, Ghafouri-Fard S. Meta-Analysis of Association Between BRIP1 Polymorphisms and Breast Cancer Risk. Int J Cancer Manag. 2019;12(1):e84234. https://doi.org/10.5812/ijcm.84234.

Abstract

Context:

Several studies have assessed the associations between BRCA1-interacting protein 1 (BRIP1) polymorphisms and risk of breast cancer. However, their results were mostly inconsistent and questionable.

Objectives:

The aim of the current study was to appraise the association between BRIP1 variants and susceptibility to breast cancer through performing a meta-analysis.

Data Sources:

We investigated and gathered English literature existed in Medline, PubMed, Embase, Web of Science, and Google Scholar (up to January 2018) by the search terms “BRIP1 gene”, “breast cancer”, “SNPs”, and “polymorphism”.

Results:

Case-control researches with almost identical strategies and adequate information for calculation of odds ratio (OR) with 95% confidence interval (CI) were included in the present study. Consequently, 3 publications in distinct ethnic groups including 986 cases and 1087 controls were chosen. The meta-analysis showed that the single-nucleotide polymorphism of rs4988344 in the BRIP1 gene was associated with breast cancer risk in homozygous (P = 0.46 for heterogeneity, OR = 1.66, 95% CI = [1.05, 2.63]) and recessive models (P = 0.44, OR = 1.62, 95% CI = [1.07, 2.46]), while rs7213430 was associated with breast cancer in dominant model (P = 0.03 for heterogeneity, OR = 0.74, 95% CI = [0.55, 0.98]).

Conclusions:

The current meta-analysis showed the association between certain BRIP1 polymorphisms and breast cancer risk.

1. Context

Breast cancer as a complex disorder is a field of interactions between several genetic and environmental factors (1). Numerous association studies have been conducted to assess the influence of single nucleotide variants (SNPs) in human genome on susceptibility to breast cancer (2). Among possible susceptibility, loci is the gene coding for BRCA1-interacting protein 1 (BRIP1), which is a member of the DEAH helicase family (3). The essential role of BRIP1 in DNA repair and genomic stability as well as its co-localization with BRCA1 in nuclear foci (4) supports its putative role in the pathogenesis of breast cancer. Moreover, germline mutations in BRIP1 led to Fanconi anemia, a genetic disorder of both chromosome instability and cancer predisposition (5). There are a number of association studies, which have assessed the role of certain SNPs within this gene in conferring the risk of breast cancer in different populations (6-8). However, the results of these studies are inconclusive.

2. Objectives

To further examine the association between SNPs within BRIP1 and predisposition to breast cancer, we conducted a systematic search and meta-analysis of eligible association studies.

3. Data Sources

3.1. Publication Search

We searched Medline/PubMed, ISI Web of Knowledge, and Google Scholar to find eligible studies until January 2018. The search terms “BRIP1 gene”, “breast cancer”, “SNPs”, and “polymorphism” were used. In addition, we assessed the references of associated publications to get all of relevant publications. We just selected studies with full-text articles in English.

3.2. Inclusion Criteria

The succeeding inclusion criteria were considered: (1) Assessment of the BRIP1 variants and predisposition to breast cancer; (2) case control studies with appropriate design; (3) adequate published data to calculate odds ratios (OR) with 95% confidence interval (CI); (4) written in English; (5) reporting comprehensive genotype and alleles frequencies. Figure 1 shows the diagram of choosing studies for including in the meta-analysis.

The PRISMA flowchart of selection of studies for including in the meta-analysis
The PRISMA flowchart of selection of studies for including in the meta-analysis
Figure 1.

The PRISMA flowchart of selection of studies for including in the meta-analysis

3.3. Data Extraction

The first two authors extracted data from all eligible studies based on the mentioned inclusion criteria. First author’s family name, time of publication, origin of study, ethnicity, type of genetic material applied for analysis, total amount of cases and controls, and genotypes quantities in each study group were extracted from each selected study.

3.4. Statistical Analysis

The assessments were implemented in RevMan version 5.3 (The Cochrane Collaboration, Copenhagen, Denmark). The association between each SNP and breast cancer risk was assessed through calculation of ORs with 95% CI under 4 inheritance models, namely the allelic (wild type [W] compared with minor [M] allele), the homozygote (WW compared with MM), the dominant (WW + WM compared with MM), and the recessive (WW compared with WM + MM) models. We also assessed the compliance with Hardy-Weinberg equilibrium (HWE). The Q parameter was calculated to evaluate the amount of heterogeneity between the studies. P values greater than 0.10 were considered as indicators of homogeneity among publications. We applied the mixed-effects model and the random-effects model to merge parameters obtained from distinct studies, if they were expected to be homogenous or heterogeneous correspondingly. Funnel plots were depicted to assess publication bias.

4. Results

4.1. The Characteristics of Eligible Studies

Three publications in distinct populations including 986 cases and 1 087 controls were chosen for the meta-analysis. The rs2048718 was the only SNP that was assessed in the 3 mentioned studies. Table 1 summarizes the principle features of these publications.

4.2. Assessment of Allele Frequencies

When all the studies were pooled, rs7213430 was found to be linked with breast cancer risk (OR = 0.79, 95% CI = [0.64, 0.98]). However, I2 value showed the heterogeneity between two studies included in this meta-analysis (P = 0.02). Figure 2 demonstrates the outcomes of the meta-analysis of associations between BRIP1 SNPs and breast cancer risk in allelic model.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in allelic inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Forest scheme of the association of BRIP1 polymorphisms and breast cancer in allelic inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Figure 2.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in allelic inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.

4.3. Assessment of Genotype Frequencies

Our meta-analysis showed that rs4988344 was associated with breast cancer risk in homozygous (P = 0.46 for heterogeneity, OR = 1.66, 95% CI = [1.05, 2.63]) and recessive models (P = 0.44, OR = 1.62, 95% CI = [1.07, 2.46]), while rs7213430 was associated with breast cancer in dominant model (P = 0.03 for heterogeneity, OR = 0.74, 95% CI = [0.55, 0.98]). Figures 3 - 5 show the outcomes of the meta-analysis of associations between BRIP1 SNPs and breast cancer risk in homozygous, dominant, and recessive models, respectively.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in homozygous inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Forest scheme of the association of BRIP1 polymorphisms and breast cancer in homozygous inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Figure 3.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in homozygous inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in dominant inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Forest scheme of the association of BRIP1 polymorphisms and breast cancer in dominant inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Figure 4.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in dominant inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in recessive inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Forest scheme of the association of BRIP1 polymorphisms and breast cancer in recessive inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.
Figure 5.

Forest scheme of the association of BRIP1 polymorphisms and breast cancer in recessive inheritance model. The error bars specify 95% confidence intervals. Solid cubes show individual studies. Solid rhomboids show pooled OR.

Moreover, the funnel plots were illustrated to appraise the presence of publication bias in all assumed genetic models (Figure 6A-D). The overall results of the funnel plots demonstrated relatively symmetrical profiles indicative of low probability of publication bias in allelic and dominant models.

The funnel plots of the associations between BRIP1 SNPs and risk of breast cancer in all assumed inheritance models separately (Log [OR], logarithm of the odds ratio; perpendicular mark, mean effect size).
The funnel plots of the associations between BRIP1 SNPs and risk of breast cancer in all assumed inheritance models separately (Log [OR], logarithm of the odds ratio; perpendicular mark, mean effect size).
Figure 6.

The funnel plots of the associations between BRIP1 SNPs and risk of breast cancer in all assumed inheritance models separately (Log [OR], logarithm of the odds ratio; perpendicular mark, mean effect size).

5. Discussion

BRIP1 has a direct interaction with the BRCT motif containing domain of BRCA1 and collaborates with BRCA1 in maintenance of genome instability and tumor suppressor effects (9). Moreover, inactivating truncating mutations in this gene are associated with both Fanconi anemia and vulnerability to breast cancer in homozygous and heterozygous states, respectively (10). Based on the emerging evidences regarding the role of BRCA1and Fanconi anemia-related genes in breast cancer susceptibility (7), we performed the present meta-analysis to evaluate the effects of SNPs within BRIP1 gene in conferring risk of breast cancer. We showed that rs4988344 was associated with breast cancer risk in homozygous and recessive models, while rs7213430 was associated with breast cancer in dominant model. The rs4988344 and rs7213430 have been located in 3’ untranslated region (3’UTR) and intron 5 of BRIP1, respectively (8). Ren et al. have reported the association between the A allele of rs7213430 and breast cancer risk Chinese Han population (8). The rs7213430 is located in the miR-101 seed-binding region and the sequence having G allele has a greater binding affinity with miR-101 than the sequence containing the A allele (11). Although the role of miR-101 as a tumour suppressor has been well documented in breast cancer (12), there are no data regarding its interaction with BRCA1 or BRIP1 in breast tissue. Future studies are needed to elaborate such possible interactions and their role in the pathogenesis of this kind of malignancy. The association between rs4988344 and breast cancer has been evaluated in Chinese Han population (8) as well as French Canadian individuals (7). Both studies failed to detect any significant association. However, the pooled data of these studies confirmed the association of this variant with breast cancer risk.

Our meta-analysis had some limitations. Firstly, the sample size was still small even after data pooling, which may influence the study power to appraise the association between the BRIP1 polymorphisms and predisposition to breast cancer. Secondly, we could not analyze the effects of environmental risk factors, such as menarche and menopause age, history of breastfeeding, and use of any hormonal medications, which might contribute in breast cancer risk. Based on the absence of such data, we could not assess gene-environment interactions in the present study. Moreover, based on the scarcity of data regarding the association between BRIP1 variants and breast cancer, we could not perform subgroup analysis. However, Begg’s test demonstrated low probability of publication bias, implying that the favored inclusion of positive results does not happen.

6. Conclusions

Our meta-analysis suggests that the rs4988344 within the BRIP1 gene was associated with breast cancer risk in homozygous and recessive models, while rs7213430 was associated with breast cancer in dominant model.

Table 1.

The Characteristics of Studies Selected for Meta-Analysis

AuthorsTimeRegionGenetic MaterialEthnicityNumber of CasesNumber of ControlsGenotype Number in ControlsGenotype Number In PatientsNOS ScoreHardy-Weinberg Equilibrium/chi-Square
WWWMMMWWWMMM
rs2048718
Frank et al. (6)2007GermanyBloodEuropean57171222834014418128310770.4012/0.70
Guénard et al. (7)2008CanadaBloodFrench Canadian967023321538411780.5379/0.38
Ren et al. (8)2013ChinaBloodAsian31930517711513201982070.2883/1.13
rs7213430
Guénard et al. (7)2008CanadaBloodFrench Canadian966223291028491980.8656/0.03
Ren et al. (8)2013ChinaBloodAsian319306124132501651173770.1433/2.14
rs4986763
Guénard et al. (7)2008CanadaBloodFrench Canadian967125341227492080.9393/0.006
Ren et al. (8)2013ChinaBloodAsian319304137134331681153670.9782/0.000
rs4988344
Guénard et al. (7)2008CanadaBloodFrench Canadian9668531507518380.3066/1.04
Ren et al. (8)2013ChinaBloodAsian319306115148431091456570.6744/0.18

Acknowledgements

References

  • 1.

    Rudolph A, Chang-Claude J, Schmidt MK. Gene-environment interaction and risk of breast cancer. Br J Cancer. 2016;114(2):125-33. [PubMed ID: 26757262]. [PubMed Central ID: PMC4815812]. https://doi.org/10.1038/bjc.2015.439.

  • 2.

    Nagrani R, Mhatre S, Rajaraman P, Chatterjee N, Akbari MR, Boffetta P, et al. Association of Genome-wide association study (GWAS) identified SNPs and risk of breast cancer in an Indian population. Sci Rep. 2017;7:40963. [PubMed ID: 28098224]. [PubMed Central ID: PMC5241870]. https://doi.org/10.1038/srep40963.

  • 3.

    De Nicolo A, Tancredi M, Lombardi G, Flemma CC, Barbuti S, Di Cristofano C, et al. A novel breast cancer-associated BRIP1 (FANCJ/BACH1) germ-line mutation impairs protein stability and function. Clin Cancer Res. 2008;14(14):4672-80. [PubMed ID: 18628483]. [PubMed Central ID: PMC2561321]. https://doi.org/10.1158/1078-0432.CCR-08-0087.

  • 4.

    Song H, Ramus SJ, Kjaer SK, Hogdall E, Dicioccio RA, Whittemore AS, et al. Tagging single nucleotide polymorphisms in the BRIP1 gene and susceptibility to breast and ovarian cancer. PLoS One. 2007;2(3). e268. [PubMed ID: 17342202]. [PubMed Central ID: PMC1800910]. https://doi.org/10.1371/journal.pone.0000268.

  • 5.

    Levran O, Attwooll C, Henry RT, Milton KL, Neveling K, Rio P, et al. The BRCA1-interacting helicase BRIP1 is deficient in Fanconi anemia. Nat Genet. 2005;37(9):931-3. [PubMed ID: 16116424]. https://doi.org/10.1038/ng1624.

  • 6.

    Frank B, Hemminki K, Meindl A, Wappenschmidt B, Sutter C, Kiechle M, et al. BRIP1 (BACH1) variants and familial breast cancer risk: a case-control study. BMC Cancer. 2007;7:83. [PubMed ID: 17504528]. [PubMed Central ID: PMC1887536]. https://doi.org/10.1186/1471-2407-7-83.

  • 7.

    Guénard F, Labrie Y, Ouellette G, Beauparlant CJ, Simard J, Durocher F. Mutational analysis of the breast cancer susceptibility gene BRIP1/BACH1/FANCJ in high-risk non-BRCA1/BRCA2 breast cancer families. J Hum Genet. 2008;53(7):579-91.

  • 8.

    Ren LP, Xian YS, Diao DM, Chen Y, Guo Q, Dang CX. Further evidence for the contribution of the BRCA1-interacting protein-terminal helicase 1 (BRIP1) gene in breast cancer susceptibility. Genet Mol Res. 2013;12(4):5793-801. [PubMed ID: 24301948]. https://doi.org/10.4238/2013.November.22.6.

  • 9.

    Cantor SB, Bell DW, Ganesan S, Kass EM, Drapkin R, Grossman S, et al. BACH1, a novel helicase-like protein, interacts directly with BRCA1 and contributes to its DNA repair function. Cell. 2001;105(1):149-60. [PubMed ID: 11301010].

  • 10.

    Seal S, Thompson D, Renwick A, Elliott A, Kelly P, Barfoot R, et al. Truncating mutations in the Fanconi anemia J gene BRIP1 are low-penetrance breast cancer susceptibility alleles. Nat Genet. 2006;38(11):1239-41. [PubMed ID: 17033622]. https://doi.org/10.1038/ng1902.

  • 11.

    Liu H, Gao F, Dahlstrom KR, Li G, Sturgis EM, Zevallos JP, et al. A variant at a potentially functional microRNA-binding site in BRIP1 was associated with risk of squamous cell carcinoma of the head and neck. Tumor Biol. 2016;37(6):8057-66. https://doi.org/10.1007/s13277-015-4682-6).

  • 12.

    Wang L, Li L, Guo R, Li X, Lu Y, Guan X, et al. miR-101 promotes breast cancer cell apoptosis by targeting Janus kinase 2. Cell Physiol Biochem. 2014;34(2):413-22. https://doi.org/10.1159/000363010.