Chemistry
All chemical substances such as starting materials, reagents and solvents were purchased from commercial suppliers like Merck and Sigma-Aldrich companies. The purity of the prepared compounds was proved by thin layer chromatography (TLC) using various solvents of different polarities. Merck silica gel 60 GF
254 plates were applied for analytical TLC. Column chromatography was performed on Merck silica gel (70-230 mesh) for purification of intermediate and final compounds.
1H-NMR spectra were recorded using a Varian 400 spectrometer, and chemical shifts are expressed as δ (ppm) with tetramethylsilane (TMS) as internal standard. The IR spectra were obtained on a Shimadzu 470 spectrophotometer (potassium bromide disks). Melting points were determined using elemental analyzer apparatus and are uncorrected. The mass spectra were run on a Finigan TSQ-70 spectrometer (Finigan, USA) at 70 eV. All cell lines were purchased from Pasteur Institute of Iran. All intermediate and final compounds were prepared according to the
scheme 1.
Synthesis of 2-(pyridin-2-ylmethylene)hydrazinecarbothioamide (2)
5 g (4.5 mL, 0.07 mmol) of pyridine-2-carbaldehyde were treated with 4.25 g (0.07 mmol) thiosemicarbazide in ethanol (100 mL) solvent. The reaction mixture was refluxed with addition of 1 mL of hydrochloric acid for 5 h. Thin layer chromatography (TLC) was utilized for monitoring the reaction progress. The formed precipitate was filtered and washed by cold water (
20).
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.42 (t, 1H, H5-Pyridine), 7.93 (t, 1H, H4-Pyridine), 8.02 (s, 1H, Pyridine-CH=N-), 8.29 (d, 1H, H3-Pyridine), 8.41 (brs, NH2), 8.76 (d, 1H, H6-Pyridine), 11.73 (brs, NH). IR (KBr, cm-1) ῡ: 3433 (NH, Stretch), 3259, 3159 (NH2, Stretch), 3055 (C-H, Aromatic, Stretch), 1608 (C=C, Aromatic, Stretch), 1527 (N-H, Bend), 1462 (C=C, Aromatic, Stretch), 1296 (C-N, Stretch). MS (m/z, %): 180 (M+, 100), 120 (90), 102 (15), 105 (20), 92 (75), 78 (40), 65 (85).
Synthesis of 5-(pyridin-2-yl)-1,3,4-thiadiazol-2-amine (3)
5 g (0.027 mmol) of 2-(pyridin-2-ylmethylene)hydrazinecarbothioamide (
2) was refluxed for 1 h with 5 g ammonium ferric sulfate [(NH
4Fe(SO
4)
2.12 H
2O] in water (100 mL) as solvent. Then, 10 g of ammonium ferric sulfate [(NH
4Fe(SO
4)
2.12 H
2O] was dissolved in 30 mL of water and added to the reaction medium. The reflux condition was continued for 30 h. Thin layer chromatography (TLC) was applied for monitoring the reaction. The reaction mixture was poured in separating funnel and ethyl acetate was added. Organic phase was washed three times by sodium bicarbonate 2% and brine. Dryness was carried out over anhydrous sodium sulfate and then filtered. The ethyl acetate was evaporated under reduced pressure and obtained powder was washed by
n-hexane and diethyl ether (
20).
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.40 (t, 1H, H5-Pyridine), 7.51 (s, 2H, NH2), 7.89 (t, 1H, H4-Pyridine), 8.03 (d, 1H, H3-Pyridine), 8.56 (d, 1H, H6-Pyridine). IR (KBr, cm-1) ῡ: 3271 (NH2, Stretch), 3093 (C-H, Aromatic, Stretch), 1620 (C=C, Aromatic, Stretch), 1500 (N-H, Bend), 1435 (C=C, Aromatic, Stretch), 1130 (C-N, Stretch). MS (m/z, %): 178 (M+, 100), 136 (15), 120 (20), 105 (40), 92 (20), 78 (60).
General procedure for synthesis of compounds 4a-4l:
In a flat bottom flask, 1.1 mmol of appropriate benzoic acid derivative was reacted with 152 mg (1.1 mmol) hydroxybenzotriazole (HOBt) and
N-ethyl-
N-dimethylaminopropyl carbodiimide (EDC) in acetonitrile (20 mL). The reaction mixture was stirred at room temperature for 30 min. Then, 200 mg (1.1 mmol) of compound (
3) was added to the reaction medium and stirring was continued for 24 h. Acetonitrile was evaporated under reduced pressure and ethylacetate/water (25/25 mL) was added to the residue. Organic layer was washed two times by sodium bicarbonate (2%) and brine. Anhydrous sodium sulfate was used for dryness and then filtered. The ethyl acetate was evaporated using rotary evaporator apparatus and the obtained powder was washed by
n-hexane and diethyl ether (Et
2O) (
17-
19,
21).
2-Chloro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4a)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.58 (m, 4H, Aromatic), 7.70 (d, 1H, J = 7.5 Hz, H3-2-Chlorophenyl), 8.00 (t, 1H, H4-Pyridine), 8.23 (d, 1H, J = 7.5 Hz, H3-Pyridine), 8.69 (d, 1H, H6-Pyridine), 13.33 (brs, NH). IR (KBr, cm-1) ῡ: 3429 (N-H, Stretch), 3116 (C-H, Aromatic), 1678 (C=O, Stretch), 1585 (C=C, Aromatic, Stretch), 1535 (N-H, Bend), 1435 (C=C, Aromatic, Stretch), 1311 (C-N, Stretch). MS (m/z, %): 318 (M++2, 5), 316 (M+, 2), 281 (85), 253 (20), 141 (55), 139 (100), 122 (20), 111 (60), 78 (40), 51 (20).
Synthetic protocol of compounds 4a-4l
| Compound | R | Closed fromula | MW (g/mol) | mp (°C) | Yield (%) |
|---|
| 4a | 2-Cl | C14H9ClN4OS | 316.77 | 250 | 37 |
| 4b | 3-Cl | C14H9ClN4OS | 316.77 | 286-289 | 56 |
| 4c | 4-Cl | C14H9ClN4OS | 316.77 | 366 | 75 |
| 4d | 2-F | C14H9FN4OS | 300.31 | 242 | 55 |
| 4e | 3-F | C14H9FN4OS | 300.31 | 321 | 53 |
| 4f | 4-F | C14H9FN4OS | 300.31 | 321 | 43 |
| 4g | 2-NO2 | C14H9N5O3S | 327.32 | 342 | 51 |
| 4h | 3-NO2 | C14H9N5O3S | 327.32 | 302 | 67 |
| 4i | 4-NO2 | C14H9N5O3S | 327.32 | 390 | 74 |
| 4j | 2-OCH3 | C15H12N4O2S | 312.35 | 228 | 19 |
| 4k | 3-OCH3 | C15H12N4O2S | 312.35 | 250 | 34 |
| 4l | 4-OCH3 | C15H12N4O2S | 312.35 | 210 | 75 |
| R | Compounds | PC3 | HT29 | SKNMC | 15-Lipoxygenase-1 |
|---|
| 4a | 2-Cl | 79.24 | 49.50 | 22.41 | 8 |
| 4b | 3-Cl | 17.71 | 45.66 | 29.78 | 8 |
| 4c | 4-Cl | 49.08 | 66.94 | 6.71 | 12 |
| 4d | 2-F | 76.78 | 65.58 | 99.64 | 17 |
| 4e | 3-F | 74.58 | 73.77 | 70.50 | 13 |
| 4f | 4-F | 28.66 | 58.42 | 64.33 | 25 |
| 4g | 2-NO2 | 35.30 | 6.52 | 54.44 | 5 |
| 4h | 3-NO2 | 59.26 | 3.28 | 49.21 | 5 |
| 4i | 4-NO2 | 37.49 | 4.01 | 56.40 | ND* |
| 4j | 2-OCH3 | 4.96 | 16.00 | 15.28 | 28 |
| 4k | 3-OCH3 | 40.70 | 73.02 | 31.89 | 26 |
| 4l | 4-OCH3 | 9.81 | 24.20 | 31.16 | 14 |
| Doxorubicin | - | 3.8 | 2.1 | 1.3 | |
| Quercetin | - | - | - | - | 100 |
3-Chloro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4b)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.53 (t, 1H, H5-3-Chlorophenyl), 7.61 (d, 1H, J = 7.5 Hz, H6-3-Chlorophenyl), 7.72 (t, 1H, H5-Pyridine), 7.99 (t, 1H, H4-Pyridine), 8.08 (d, 1H, J = 7.5 Hz, H3-Pyridine), 8.20 (s, 1H, H2-3-Chlorophenyl), 8.23 (d, 1H, J = 7.5 Hz, H4-3-Chlorophenyl), 8.69 (d, 1H, J = 7.5 Hz, H6-Pyridine), 12.50 (brs, NH). IR (KBr, cm-1) ῡ: 3147 (N-H, Stretch), 3005 (C-H, Aromatic, Stretch), 1674 (C=O, Stretch), 1535 (N-H, Bend), 1315 (C-N, Stretch). MS (m/z, %): 318 (M++2, 10), 316 (M+, 4), 315 (15), 288 (20), 211 (20), 141 (25), 139 (100), 122 (25), 111 (75), 95 (10), 78 (50), 75 (25), 51 (20).
4-Chloro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4c)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.38 (t, 1H, H5-Pyridine), 7.47 (d, 2H, J = 10 Hz, H2,6-4-Chlorophenyl), 7.89 (t, 1H, H4-Pyridine), 8.16 (d, 3H, H3-Pyridine, H3,5-4-Chlorophenyl), 8.60 (d, 1H, H6-Pyridine). IR (KBr, cm-1) ῡ: 3159 (N-H, Stretch), 3089, 3062, 3008 (C-H, Aromatic, Stretch), 1670 (C=O, Stretch), 1589 (C=C, Aromatic, Stretch), 1523 (N-H, Bend), 1485 (C=C, Aromatic, Stretch), 1311 (C-N, Stretch). MS (m/z, %): 318 (M++2, 10), 316 (M+), 315 (30), 288 (60), 149 (60), 139 (100), 111 (40), 78 (20), 57 (20).
2-Fluoro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4d)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.37 (m, 2H, H5, H4-Pyridine), 7.54 (t, 1H, H6-2-Fluorophenyl), 7.63 (t, 1H, H4-2-Fluorophenyl), 7.79 (t, 1H, H5-2-Fluorophenyl), 8.00 (t, 1H, H3-2-Fluorophenyl), 13.17 (brs, NH). IR (KBr, cm-1) ῡ: 3120 (N-H, Stretch), 3070 (C-H, Aromatic, Stretch), 1685 (C=O, Stretch), 1616 (C=C, Aromatic, Stretch), 1535 (N-H, Bend), 1496 (C=C, Aromatic, Stretch), 1319 (C-N, Stretch). MS (m/z, %): 300 (40, M+), 281 (75), 272 (40), 253 (15), 123 (100), 95 (75), 78 (30), 76 (25), 51 (15).
3-Fluoro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4e)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.56 (m, 3H, Aromatic), 8.00 (m, 3H, Aromatic), 8.24 (d, 1H, H3-Pyridine), 8.69 (d, 1H, H6-Pyridine), 13.31 (brs, NH). IR (KBr, cm-1) ῡ: 3132 (N-H, Stretch), 3070 (C-H, Aromatic, Stretch), 1678 (C=O, Stretch) 1589 (C=C, Aromatic, Stretch), 1531 (N-H, Bend), 1489 (C=C, Aromatic, Stretch), 1269 (C-N, Stretch). MS (m/z, %): 300 (15, M+), 299 (20), 272 (55), 123 (100), 95 (90), 78 (40), 51 (20).
4-Fluoro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4f)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.39 (t, 2H, H2,6-4-Fluorophenyl), 7.53 (t, 1H, H5-Pyridine), 7.99 (t, 1H, H4-Pyridine), 8.23 (3H, Aromatic), 8.68 (d, H6-Pyridine), 13.35 (brs, NH). IR (KBr, cm-1) ῡ: 3151 (N-H, Stretch), 3066 (C-H, Aromatic, Stretch), 1678 (C=O, Stretch), 1604 (C=C, Aromatic, Stretch), 1539 (N-H, Bend), 1234 (C-N, Stretch). MS (m/z, %): 300 (20, M+), 299 (30), 272 (40), 123 (100), 95 (40), 78 (20).
2-Methoxy-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4g)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 3.91 (s, 3H, -OCH3), 7.09 (t, 1H, H5-2-Methoxyphenyl), 7.22 (d, 1H, H3-2-Methoxyphenyl), 7.56 (m, 2H, H5-Pyridine, H4-2-Methoxyphenyl), 7.70 (d, 2H, H6-2-Methoxyphenyl), 7.99 (t, 1H, H4-Pyridine), 8.23 (d, 1H, H3-Pyridine), 8.69 (d, 1H, H6-Pyridine), 12.44 (brs, NH). IR (KBr, cm-1) ῡ: 3294 (N-H, Stretch), 3070 (C-H, Aromatic, Stretch), 1666 (C=O, Stretch), 1600 (C=C, Aromatic, Stretch), 1523 (N-H, Bend), 1485 (C=C, Aromatic, Stretch), 1238 (C-N, Stretch). MS (m/z, %): 312 (M+, 10), 282 (30), 281 (100), 136 (20), 135 (100), 92 (35), 78 (35), 77 (75), 51 (15).
3-Methoxy-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4h)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 3.85 (s, 3H, -OCH3), 7.22 (d, 2H, J = 7.5 Hz, H6-3-Methoxyphenyl), 7.43 (t, 1H, H5-3-Methoxyphenyl), 7.53 (d, 2H, J = 7.5 Hz, H6-3-Methoxyphenyl), 7.71 (s, H2-3-Methoxyphenyl), 7.73 (t, 1H, H5-Pyridine), 7.99 (t, 1H, H4-Pyridine), 8.23 (d, 1H, H3-Pyridine), 8.69 (d, 1H, H6-Pyridine), 13.20 (brs, NH). IR (KBr, cm-1) ῡ: 3109 (NH, Stretch), 3051 (C-H, Aromatic, Stretch), 2920, 2846 (C-H, Aliphatic, Stretch), 1670 (C=O, Stretch), 1585 (C=C, Aromatic, Stretch), 1531 (N-H, Bend), 1492 (C=C, Aromatic, Stretch), 1276 (C-N, Stretch). MS (m/z, %): 312 (M+, 15), 284 (25), 135 (100), 122 (15), 107 (5), 92 (35), 77 (20).
4-Methoxy-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4i)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 3.81 (s, 3H, -OCH3), 6.99 (d, 2H, J = 7.5 Hz, H3,5-4-Methoxyphenyl), 7.36 (t, 1H, H5-Pyridine), 7.51 (m, 1H, Pyridine), 7.69 (d, 2H, J = 7.5 Hz, H2,6-4-Methoxyphenyl), 8.05 (m, 3H, Pyridine), 8.56 (d, 1H, H6-Pyridine), 13.25 (brs, NH). IR (KBr, cm-1) ῡ: 3275 (N-H, Stretch), 3097, 3066 (C-H, Aromatic, Stretch), 2931 (C-H, Aliphatic, Stretch), 1662 (C=O, Stretch), 1604 (C=C, Aromatic, Stretch), 1261 (C-N, Stretch).
MS (m/z, %): 312 (M+, 10), 284 (10), 135 (100), 122 (10), 107 (15), 92 (15), 77 (20).
2-Nitro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4j)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.55 (t, 1H, H5-Pyridine), 7.82-7.92 (m, 3H, Aromatic), 8.02 (t, 1H, H3-Pyridine), 8.23 (t, 2H, Aromatic), 8.69 (d, 1H, H6-Pyridine), 13.45 (brs, NH). IR (KBr, cm-1) ῡ: 3097 (C-H, Aromatic, Stretch), 2997, 2897 (C-H, Aliphatic, Stretch), 1678 (C=O, Stretch), 1531 (NO2, Stretch, Asymmetric), 1311 (NO2, Stretch,
Symmetric). MS (m/z, %): 327 (12, M+), 299 (20), 281 (30), 253 (25), 205 (15), 150 (75), 122 (100), 104 (20), 78 (75), 76 (40), 51 (45).
3-Nitro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4k)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.54 (t, 1H, H5-Pyridine), 7.86 (t, 1H, J = 7.5 Hz, H5-3-Nitrophenyl), 8.02 (t, 1H, H4-Pyridine), 8.23 (d, 1H, H4-3-Nitrophenyl), 8.47 (d, 1H, H3-Pyridine), 8.53 (d, 1H, H6-3-Nitrophenyl), 8.69 (d, 1H, H6-Pyridine), 8.98 (s, 1H, H2-3-Nitrophenyl), 13.50 (brs, NH). IR (KBr, cm-1) ῡ: 3093 (C-H, Aromatic, Stretch), 2997, 2920 (C-H, Aromatic, Stretch), 1674 (C=O, Stretch), 1531 (NO2, Asymmetric, Stretch), 1323 (NO2, Symmetric, Stretch). MS (m/z, %): 327 (25, M+), 326 (45), 299 (50), 240 (15), 205 (40), 150 (100), 122 (35), 104 (50), 78 (45), 76 (50), 50 (15).
4-Nitro-N-(5-(pyridin-2-yl)-1,3,4-thiadiazol-2-yl)benzamide (4l)
1H NMR (DMSO-d6, 250 MHz) δ (ppm): 7.51 (t, 1H, H5-Pyridine), 7.68 (dd, 4H, 4-Nitrophenyl), 7.98 (t, 1H, H4-Pyridine), 8.21 (d, 1H, H3-Pyridine), 8.67 (d, 1H, H6-Pyridine). IR (KBr, cm-1) ῡ: 3136 (NH, Stretch), 3070 (C-H, Aromatic, Stretch), 2924 (C-H, Aliphatic, Stretch), 1685 (C=O, Stretch), 1527 (NO2, Asymmetric, Stretch), 1319 (NO2, Symmetric, Stretch). MS (m/z, %): 327 (20, M+), 299 (30), 240 (80), 205 (20), 178 (60), 167 (50), 149 (90), 136 (25), 123 (60), 109 (40), 97 (60), 83 (60), 69 (75), 57 (100).
MTT assay
Synthesized derivatives of 1,3,4-thiadiazole (compounds 4a-4l) were tested for cytotoxic activity at 0.1-250 mcg/mL concentration in three human cancer cell lines of PC3 cell (prostate cancer), HT-29 (Colon cancer) and SKNMC (Neuroblastoma). Cells from different cell lines were seeded in 96-well plates at the density of 8000–10,000 viable cells per well and incubated for 48 h to allow cell attachment. The cells were then incubated for another 48-96 h (depends to cell cycle of each cell line) with various concentrations of compounds 4a-4l. Cells were then washed in PBS, and 20 μL of MTT (3-(4, 5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide solution (5 mg/mL) were added to each well. An additional 4 h of incubation at 37 oC were done, and then the medium was discarded. Dimethyl sulfoxide (60 μL) was added to each well, and the solution was vigorously mixed to dissolve the purple tetrazolium crystals. The absorbance of each well was measured by plate reader (Anthous 2020; Austria) at a test wavelength of 550 nm against a standard reference solution at 690 nm. The amount of produced purple formazan is proportional to the number of viable cells
Enzymatic assay
The basis of this method is oxidative coupling of 3-methyl-2-benzothiazolinone hydrazone (MBTH) with 3-(dimethylamino) benzoic acid (DMAB) in a hemoglobin catalyzed reaction. This reaction is initiated in the presence of lipoxygenase reaction product, linoleic acid hydroperoxide and results in a blue color formation which has a peak absorbtion at 590 nm (
22). Quercetin was used as the reference compound. Linoleic acid and two stock solutions (A and B) were prepared first. Solution A contained 50 mM DMAB and l00 mM phosphate buffer (pH = 7.0). Solution B was prepared by mixing 10 mM MBTH (3 mL) and hemoglobin (5 mg/mL, 3 mL) in 50 mM phosphate buffer at pH 5.0 (25 mL). A linoleic acid solution (1mg/mL) was prepared by diluting 5 mg linoleic acid (solubilised in 0.5 mL ethanol) with KOH 100 mM. For each compound the samples were solved in ethanol (25 µL) and mixed in a test tube with SLO (4000 units/mL, prepared in 50 mM phosphate buffer pH = 7.0, 25 µL) and phosphate buffer (50 mM, pH = 7, 900 µL). After a 5 min delay at room temperature, 50 µL linoleic acid was added to the mixture to start the hydroperoxidation reaction. After 8 min, solution A (270 µL) and solution B (130 µL) were added to the above mixture. 5 min later, 200 µL of SDS solution (2%) was added to stop the reaction. The absorbance at 590 nm was compared with control (ethanol without sample).