3.1. Collection and Authentication of Plant Material
The leaves of T. mutabilis vent. were collected from the site known as "La Pila" near San Pedro Juchatengo, Juquila, Oaxaca (16° 20′ 35″ N and 97° 5′ 15″ W, at 860 masl). The collected samples were deposited and authenticated (voucher number 1439220) at the National Herbarium of Mexico (MEXU) of the National Autonomous University of Mexico (UNAM).
3.2. Preparation of Plant Extracts
Preliminary experiments using different plant tissues (flowers, fruits, leaves, and stem) in combination with various extraction solvents (chloroform, methanol, and water) indicated that the chloroform extract prepared from the leaves of T. mutabilis vent. exhibited the most significant inhibition of MCF-7 cell proliferation compared to other tissue-solvent combinations (data not shown). Based on these findings, the leaves of T. mutabilis vent. and chloroform were selected for the extraction process in this study.
The leaves were washed twice with tap water and twice with distilled water, then drained and dried in sunlight for 14 days. The dried plant material (50 g) was ground into powder and extracted with 250 mL of reagent-grade chloroform (Merck KGaA, Darmstadt, Germany) with constant stirring for 24 hours. The chloroform extract was then filtered using Whatman #2 filter paper (Healthcare Life Sciences, Sheffield, United Kingdom). The solvent was removed under vacuum at 40°C using a Buchi® R-100 rotary evaporator (BUCHI Labortechnik AG, Flawil, Switzerland), dried under a nitrogen atmosphere, and stored at 4°C until use.
3.3. Cell Lines and Cell Culture Maintenance
The MCF-7 cell line (from the American Type Culture Collection: ATCC HTB-22) was cultured in RPMI 1640 medium supplemented with L-glutamine (Caisson Laboratories, Inc. USDA), 10% fetal bovine serum (FBS, Mediatech Inc. USDA), and 1% antibiotic-antimycotic solution (100X, Caisson Laboratories, Inc. USDA) containing streptomycin, gentamicin, and ampicillin. The cells were incubated in a humidified atmosphere with 6% CO2 at 37°C in an MR Incubator (Binder, Germany).
The immortalized human dermal microvascular endothelial cell line (HMEC-1, from ATCC CRL-3243) was cultured in MCDB-131 medium (Caisson Laboratories, Inc. USDA), supplemented with 15% FBS (Mediatech Inc. USDA), 10 mM L-glutamine (Sigma-Aldrich Co., Missouri, USA), 10 ng/mL endothelial growth factor (EGF, Boehringer, Mannheim, Germany), and 1 μg/mL water-soluble hydrocortisone (Sigma-Aldrich Co., Missouri, USA). The cells were incubated in 6% CO2 at 37°C.
3.4. Cell Treatment and Proliferation Assay
Due to its relatively low aqueous solubility, the dried crude extract of T. mutabilis vent. was separately solubilized in chloroform, hexane, and ethanol, and then mixed with the culture medium to achieve the desired extract concentrations of 2.5, 5, 10, 20, 40, and 80 µg/mL. The solvent concentration in the reaction mixture was consistently maintained at 1% v/v. The resultant mixture was immediately used for the cell assays as described below.
MCF-7 cells were seeded in 96-well plates (Costar Corning, Inc., USA) at a density of 5,000 cells per well, cultured for 24 hours in a humidified chamber with 6% CO2 at 37°C, and then incubated in the reaction mixture for 12, 24, 48, and 72 hours. HMEC-1 cells were seeded in 96-well plates (Costar Corning, Inc., USA) at a density of 6,500 cells per well, cultured for 24 hours in a humidified chamber with 6% CO2 at 37°C, and then incubated in the reaction mixture for 48 hours.
Staurosporine (1 µM, 0.46 µg/mL), which induces apoptosis after 24 hours, was used as a positive control (Antonsson and Persson, 2009). All solvents were supplied by Merck KGaA (Darmstadt, Germany). Cell proliferation of MCF-7 and HMEC-1 cells was assessed using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay (AppliChem GmbH, Darmstadt, Germany) and crystal violet staining.
For the MTT assay, after treatment, 20 µL of MTT solution (5 mg/mL) was added to the cells and incubated for 4 hours at 37°C. Formazan crystals formed during this process were solubilized in acidified isopropyl alcohol (50 µL), and absorbance was recorded at 570 nm using a plate reader (Thermo Scientific, USDA).
For the crystal violet assay, after removing the supernatant, MCF-7 or HMEC-1 cells were fixed with glutaraldehyde (1.1%, 50 µL per well) and incubated for 10 minutes. Following the removal of glutaraldehyde, cells were washed with tap water, then stained with 50 µL per well of 0.1% crystal violet (prepared in 200 mM formic acid, pH 3.5) and incubated for 20 minutes. Excess crystal violet was removed with tap water, and the incorporated dye was solubilized with 10% acetic acid (50 µL per well). Absorbance was recorded at 595 nm (
12).
The percentage of inhibition was calculated using the following equation:
Where Aa = Absorbance of treated cells and Aa = Absorbance of untreated cells (control) (
13).
3.5. Apoptosis Assay
Apoptosis was evaluated using 2’,7’–dichlorofluorescin diacetate (DCFDA) (Sigma-Aldrich Co., Missouri, USA) and propidium iodide (PI) (Miltenyi Biotec, Bergisch Gladbach, Germany) staining. DCFDA is a doubly acetylated derivative of the green fluorescent dye fluorescein. It can easily diffuse through the phospholipid bilayer of cell membranes, and upon cleavage of the two DCFDA acetyl groups by intracellular esterases, the negatively charged fluorescein groups are retained within cells with intact membranes (
13). In contrast, PI is a dye that cannot diffuse through intact membranes and is generally excluded from viable cells. However, PI can penetrate damaged membranes of dead cells and bind to DNA by intercalating between the bases, making it useful for identifying cells undergoing cell death.
In this study, DCFDA-PI double staining was used simultaneously to evaluate both dead and viable cells (
14). MCF-7 cells, at a concentration of 200,000 cells/mL, were seeded in 6-well plates (Costar Corning Inc., New York, USA) containing RPMI 1640 medium and incubated for 24 hours in a humidified atmosphere containing 6% CO
2 at 37°C. Following incubation, the spent culture medium was removed, fresh medium was added, and the cells were treated for 48 hours with the extract (86.4 µg/mL), 3% H
2O
2 (positive control), chloroform, or left untreated.
After treatment, the culture medium was removed, and the cells were washed with cold 1X PBS (1 mL). They were then treated with 60 µL of a staining solution (50 µL PI and 10 µL DCFDA) and incubated in the dark at room temperature for 10 minutes. Cells were subsequently analyzed at 10X, 20X, and 40X magnification using a Leica DM2000 fluorescence microscope (Leica Microsystems GmbH, Wetzlar, Germany).
3.6. Caspase Assays
The ApoAlert caspase fluorescent assay kit (Clontech Laboratories Inc., California, USA) was used according to the manufacturer’s instructions to assess the protease activity of caspases 3 and 9/6, which are activated at different stages and/or pathways of the apoptotic process.
MCF-7 cells, at a concentration of 200,000 cells/mL, were seeded in 6-well plates containing RPMI 1640 medium and incubated for 24 hours in a humidified atmosphere with 6% CO2 at 37°C. After incubation, the cells were treated with T. mutabilis vent. extract (86.4 µg/mL) or with fraction F8 (86.4 µg/mL), which was obtained by chromatographic fractionation of the crude extract (as described below). The treated cells were incubated for an additional 18 hours.
Following treatment, the cells were fixed with 2% paraformaldehyde for 10 minutes, washed with 1 mL PBS, and 100 µL of permeabilizing buffer diluted in injectable water was added. Next, 50 µL of 2X reaction buffer containing DTT were added to the cells, which were then incubated on ice for 30 minutes. Subsequently, 5 µL of caspase-3 substrate (50 µM) or 5 µL of caspase-9/6 substrate (250 µM) were added to the cells. The cells were then incubated for one hour in a 37 °C water bath. After incubation, nuclei were labeled with 4',6-diamidino-2-phenylindole (DAPI) (blue color). Images were captured using an LSM-700 confocal microscope (Carl Zeiss, Baden-Württemberg, Germany). Controls included cells grown in RPMI 1640 medium alone and cells grown in the medium with chloroform. Each experiment, whether with the T. mutabilis vent. extract, the fraction F8, or the controls, was performed in triplicate.
3.7. Chromatographic Fractionation of the Crude Extract
The crude extract (3 g) was fractionated by silica column chromatography (CC) using 55.5 g of silica. The elution was carried out with mixtures of hexane, ethyl acetate, and methanol with increasing polarity. The solvent percentages used were as follows: 100 - 0 - 0, 95 - 5 - 0, 90 - 10 - 0 (two volumes), 85 - 15 - 0, 80 - 20 - 0 (six volumes), 66 - 34 - 0 (four volumes), 0 - 100 - 0 (five volumes), and 0 - 0 - 100 (two volumes), where one volume corresponds to 100 f. The collected fractions were analyzed by thin-layer chromatography (TLC), and those displaying a similar band pattern were grouped into 22 new fractions.
From these 22 fractions, five (F3, F4, F8, F13, and F18) were selected for further investigation based on their TLC profiles, specifically because they exhibited the lowest number of bands (2 - 4) on the TLC plates, indicating potential purity or simplicity in composition. These five fractions were then subjected to cell proliferation inhibition assays.
After solvent removal from the fractions at 40°C under vacuum using a Buchi® R-100 rotatory evaporator (BUCHI Labortechnik AG, Flawil, Switzerland), the samples were transferred to amber vials, dried under air drag for 12 hours, and stored at 4°C until use. Colorimetric phytochemical assays were conducted to identify the secondary metabolite groups present in each of the 22 fractions.
Interestingly, it was observed that all five selected fractions were completely soluble in ethanol. Therefore, each fraction was solubilized in ethanol prior to being evaluated for its effects on cell proliferation.
3.8. Phytochemical Screening
Qualitative assays were conducted to identify the categories of secondary metabolites present in the extract. The following tests were employed: (1) dragendorff test, for alkaloids; (2) shinoda-NaOH test, for flavonoids (
15); (3) NaOH test, for coumarins (
16); (4) rosenthaler-acetic anhydride test,for saponins; (5) gelatin reagent/FeCl₃ test, for tannins; (6) borntrager reaction, for quinones; (7) Baljet test, for cardiotonic glycosides; (8) hydroxylamine hydrochloride test, for sesquiterpene lactones. These tests were used to explore and identify the presence of specific secondary metabolites in the extract.
3.9. Statistical Analysis
All experiments were conducted in triplicate across at least three independent trials. The results are presented as mean ± standard deviation (SD). Statistical significance was determined using one-way ANOVA, with a P-value < 0.01 considered significant. The data analysis was performed using GraphPad Prism 6.00 software (La Jolla, California, US).