A significant number of mutations have been reported in the
F7 gene. According to the FVII gene variant database (
factorvii.org) and human gene mutation database (
hgmd.cf.ac.uk), there are more than 200 different variants throughout the
F7 gene that can affect all protein domains. Missense mutations are the most frequent type of mutation, followed by splice site mutations, promotor mutations, nonsense mutations, and small insertions and deletions (
15). Many of these mutations are considered the cause of FVII deficiency, but only a small number of them have been functionally studied and described. The International Registry on FVII deficiency (IR
F7) and the Greifswald Registry record more than 1000 FVII deficiency genetic diagnoses (
22,
23). In the
F7 gene, several large rearrangements have been identified that can lead to FVII deficiency. So far, five large chromosomal deletions of chromosome 13, including the entire or part of the
F7 gene, have been reported (
24-
27). Despite the observation of mutations in the promoter, exon, and splice sites in most patients, less than 10% of the patients had no mutations in the
F7 gene. Even with next-generation sequencing, mutations in some patients remain unknown, suggesting that FVII deficiency could be caused by mutations in genes other than
F7 (
28,
29).
The plasma levels of FVII (activity and antigen) are variable between healthy and FVII deficient subjects, making FVII:C and FVII:Ag tests (FVII antigen level) ineffective for diagnosing FVII deficiency. Different environmental factors such as sex, age, weight, and diabetes are of considerable importance. For example, FVII levels increase with age and are lower in women than men at younger ages (
30). On the other hand, differences in plasma levels of FVII can also be due to genetic factors in which the role of multiple polymorphisms has been proven (
31).
G > A substitution at position -402 and G > T in -401 are two common unrelated functional polymorphisms in the promoter region of the
F7 gene. The -401T allele decreases the basal transcription level of the
F7 gene. In contrast, the -402A allele is associated with increased transcriptional activity of the
F7 gene (
32). The FVII levels in healthy subjects are reduced by 25% when a 10bp insertion (rs36208070) occurs at position -323 in the 5'UTR of the
F7 gene (
20). The G73A polymorphism (rs6039) in intron 1a of the
F7 gene can also affect the FVII level. The A73 allele reduces the plasma levels of FVII (
33). Previous studies revealed that coding region polymorphisms could also affect the FVII plasma level. An example is the Q353 allele of R353Q (rs6046) polymorphism derived from the substitution of G to A at position 10976 of exon 8, which causes a 25% decrease in FVII activity and antigen levels (
34). Additionally, genome-wide association studies (GWAS) have identified several genomic regions associated with FVII levels that may provide additional data on how FVII levels vary among individuals (
35,
36).
Multiple studies have investigated the association between
F7 polymorphisms and cardiovascular diseases. In this regard, a meta-analysis revealed that the -323Ins10 polymorphism was significantly associated with coronary heart disease (CHD) in Asians and Europeans, and R353Q polymorphism showed an association with CHD in the Asian population (
37). Another meta-analysis confirmed the association of R353Q with CHD and suggested that R353Q polymorphism was associated with the reduced risk of CHD in Asians (
38).
F7 gene polymorphisms may be involved in response to anticoagulants such as warfarin. Research has shown that R353Q plays a critical role in the initial response to warfarin (
39).
For some mutations detected in patients, recombinant FVII expression and site-directed mutagenesis of
F7 have been used in various functional studies. These studies examine the effects of different variants on FVII features such as the secretion rate, ligand binding, coagulation activity, and intracellular localization to elucidate the molecular basics of the deficiency. FVII mutants are valuable tools for evaluating single residues or defining essential regions involved in the structure-function relationship and the formation of macromolecular complexes (
40). Site-directed mutagenesis, in vitro expression, and description of TF and FVII variants have identified essential amino acids for TF binding and TF-FVIIa activity. Such studies suggest that the binding of FVII to TF occurs through a large interface, and the interface includes four FVIIa domains and two extracellular TF domains (
41). A study showed that FVII with the R79Q mutation was normally expressed but had a reduced affinity for TF binding (
42). In this regard, further studies taking advantage of X-ray crystallography showed that the side chain of this residue played an important role in the interaction of EGF1 with TF (
43). Elsewhere, an investigation indicated that the F328S mutation reduced the FVII affinity for TF and prevented FVII from activating FX, possibly due to a disruption in the site of attachment to the substrate (
44). The R152Q mutation showed poor expression in another functional study and had no detectable coagulation activity. This mutation occurs at the site of proteolytic cleavage of FVII and inhibits the activation of FVII (
45). H348R and S282R mutations detected in a compound heterozygote patient were examined in a study. Both mutations showed reduced secretion and coagulant activity while not altering the protein's intracellular localization (
40).
Some mutations lead to intracellular accumulation of FVII. For instance, the T359M mutation causes FVII to accumulate within the cell and thus results in a severe defect in
F7 secretion (
46). Interestingly, another study examining the functional properties of FVII showed that C91S mutation led to increased protein secretion in the culture medium while severely reducing coagulant activity (
5).
Cysteine residues play an essential role in the function and structure of FVII protein. For instance, the Cys329Gly mutation in the catalytic domain disrupts the formation of a disulfide bond with Cys310. This disulfide bond is essential for binding TF and the catalytic function of FVIIa (
47).
The development of advanced bioinformatics software and in silico tools enables us to investigate the phenotype-genotype correlation and predict the effects of novel mutations detected in genetic diseases, including FVII deficiency. Tiscia et al. characterized a novel variation (c.1199G>C) using the bioinformatics tools such as PROMO, SIFT, and Polyphen-2. In silico predictions revealed that c.1199G>C had a damaging effect on FVII conformation via influencing the formation of the Cys400-Cys428 disulfide bond (
48).
Novel variations keep being detected, and their effects need to be examined using in silico and laboratory testing. In 2021, Zhang et al. detected four novel variations (c.251T>C, c.466G>A, c.1016C>T, c.‐16T>G) and investigated their pathogenicity using PyMOL2.4, Swiss‐PDB Viewer, SIFT, POLYPHEN‐2. Bioinformatics analyses found these variations pathogenic (
49). In another study, Liang et al. detected two novel variations in three patients with FVII deficiency; the molecular model analysis of the two novel mutations (Cys115Arg and Pro324Leu) indicated impairment of the proper folding of the EGF1 domain and impairment of the
F7 coagulant activity (
50). Cys164Tyr, another novel mutation, was found in a patient with mild clinical manifestations despite deficient FVII activity (
51).