Breast cancer (BC) is a significant reason for cancer-related death among women; approximately 40000 deaths occur per year in the United States (
1). About 1 in 12 women in developed countries is diagnosed with BC during her life. Despite advancements in the primary diagnosis and therapy of BC such as smart drug delivery by nanoparticles (
2-
4), immunotherapy, and gene therapy, mortality is about 100% for that 20% of patients with metastases (
5). Currently, early tumor size and the presence of lymph node metastasis (LNM) are the most significant prognostic markers of BC. However, the precision of these typical indicators that are used in the clinical setting is not high, thereby leading to the ineffective application of systemic treatment. BC has various presentations with extensive diverseness in its morphological features, clinical subsequences, prevalence tendency, and subtypes. Age is the most significant risk factor of BC, followed by a positive family history of BC. Hereditary susceptibility created by mutations in BRCA1/2 genes is responsible for 5 to 10% of all BCs among women (
6). The genetic alterations in BC can be classified into two separate categories. The first category is gain-of-function mutations in proto-oncogenes. These mutations stimulate cell growth and division. The second category of genetic alterations is loss-of-function mutations in tumor suppressor genes that lead to the lack of ability to repair DNA after damage, uncontrollable cell growth, and lack of cell cycle checkpoints (
7). Women inheriting loss-of-function mutations have an up to 85% risk of aggressive BC to the age of 70 years. Mutations in BRCA1/2 genes are two central players related to the high risk of BC. Germ-line mutations in these two genes are responsible for 16% of all hereditary BC cases. The breast cancer type 1 susceptibility protein (BRCA1) and 2 genes are tumor suppressor genes that are involved in DNA recombination and transcriptional regulation (
8). Another significant mutation can occur in tumor protein p53 (TP53), leading to a triple negative BC (TNBC). TNBC is the most aggressive form of BC, whose management is considered a medical challenge (
9). TP53, phosphatase and tensin homologue (PTEN), Nijmegen breakage syndrome gene (NBS1), ataxia-telangiectasia mutated (ATM), and serum thymidine kinase 1 (STK1) are involved in hereditary BC syndromes like Li-Fraumeni (TP53), Cowden syndrome (PTEN), Nijmegan Breakage Syndrome (NBS1), Louis-Bar Syndrome (ATM), and Peutz Jeghers (STK1/LKB1). The majority of BC cases are not associated with high-throughput mutant genes such as BRCA1, breast cancer type 2 susceptibility protein (BRCA2), and TP53 (
10). Low-throughput genes, including NBS1, checkpoint kinase 2 (CHEK2), DNA repair protein Rad50 (RAD50), E-cadherin gene (CDH1), partner and localizer of BRCA2 (PALB2), and BRCA1-interacting protein 1 (BRIP1) that are often mutated in the global population mostly contribute to BC extension (
11). Recent studies have also shown that miRNAs can regulate signaling pathways negatively or positively, thereby affecting tumorigenesis and various aspects of cancer progression, particularly BC (
12-
14). Cancer-causing driver mutations confer selective clonal growth advantage and oncogenic potential to cells. The ability to invade and pass basement membranes of the endothelium and secondary organ sites is a hallmark of metastatic cancer cells. Distant metastasis or local invasion, rather than an early tumor, is responsible for the mortality of patients with cancer. Metastasis is a complex process, involving escape from an initial tumor, infiltration into lymph-vascular space, survival in the circulatory system, extravasation, and growth in the new site as a secondary tumor (
15). The cellular mechanisms of metastasis are not well understood, but increased cell motility is one of the reasons. Increased motion of cancer cells has been related to a poor prognosis in human cancer and larger metastatic potential in animal models. However, newly reported research studies maintain the importance of targeted therapies on response to treatment in poor prognosis patients with BC. Barroso-Sousa et al. in 2020 in a cohort study demonstrated that high tumor mutational burden (TMB) and PTEN alterations correlate with response to anti-PD-1/L1 therapies among patients with metastatic triple-negative BC (mTNBC). This study showed that high TMB was associated with improved progression-free survival, while PTEN alterations were related to decreased responses and progression-free and survival among these patients (
16). In other studies of pre-treatment and post-treatment biopsies from patients with triple-negative BC (TNBC) demonstrated androgen receptor (AR) expression, 5-bisphosphate 3-kinase (PIK3CA), phosphatidylinositol-4, and luminal gene expression of mutated genes in these pathologic conditions due to various responses in patients. For example, patients with luminal AR (LAR) subtype tumors possess clinical benefits and better prognosis and prolonged progression-free survival besides alteration in cell signaling-related gene expression (
17). Considering the variability in clinical development of BC, identification of new molecular markers of tumor behavior at the time of diagnosis is important. Few markers of BC development have been confirmed to be clinically beneficial (
18). Progesterone receptor (PR) and estrogen receptor (ER) are extremely predictive in patients with BC that will profit from endocrine treatment; however, they are weak prognostic factors. ErbB2 [human epidermal growth factor receptor-2 (HER2)/neu] amplification or overexpression, Urokinase-type plasminogen activator receptor (uPAR), Ki-67, STAT3, and cathepsin D are other tumor markers that have been considered for prognosis in BC (
19). Therefore, there is a need for new prognostic factors that are more precise and valid. In this review, we discuss new prognostic factors of aggressive BC.