TNBC is considered a heterogeneous neoplasm with regard to molecular aberrations. Analysis of genomic expression profile of TNBC has delineated 4 subtypes, including: Basal like 1 (BL1), Basal like 2 (BL2), Luminal androgen receptor (LAR), and Mesenchymal (M) (
11,
12). BL1 constitutes about 35% of TNBCs and express cell cycle and DNA repair genes. BL2 constitutes 22% of TNBCs and express genes involved in the signal transduction of growth factors (epidermal growth factor (EGF), insulin-like growth factor 1 (IGF1), Wnt/β-catenin), growth factor receptors (epidermal growth factor receptor (EGFR), MET, insulin-like growth factor 1 receptor (IGF1R), EPH receptor A2 (EPHA2)), glycolysis and gluconeogenesis pathways. LAR constitutes 16% of TNBC and expresses androgen receptor and luminal genes. M constitutes 25% of TNBC and expresses genes involved in epithelial mesenchymal transition (EMT), cellular movement and differentiation, cancer stem cell regulation and growth factor signal transduction. This vast amount of heterogeneity in TNBC neoplasms necessitates personalization of treatment of TNBC based on novel discoveries in precision oncology.
About 10% to 20% of patients with TNBC carry germline mutations in
BRCA1 gene. In addition, in patients who are negative for germline
BRCA1 mutation, somatic mutations in homologous recombination pathway can create a similar phenotype named “BRCAness” (
13). Increased response rate to genotoxic treatments such as platinium-based agents like carboplatin and cisplatin, have been detected both in carriers of
BRCA1 mutations and in patients with tumors showing BRCAness phenotype (
14).
TNBC tumors show high genetic instability, with median mutation number of 1.7 in 1 million bases (range: 0.16 - 5.23) (
15,
16). In addition, complex copy number alteration (CNAs) and structural rearrangement have been detected in TNBCs (
17). There is a vast amount of variation in the genes mutated in TNBCs. Although some TNBCs have limited somatic mutations, in most TNBC neoplasms, a high rate of mutations have been detected in genes involved in signal transduction pathways (
18). The most frequent mutated genes in TNBCs are
TP53 and
PIK3CA which are mutated in 82% and 10% of these tumors, respectively (
19). However, in contrast to ER positive breast cancers, somatic mutations in TP53 in TNBCs are mostly nonsense single nucleotide variants and indels (
18,
19). Somatic mutations in other known cancer driver genes, including
PTEN,
RB1,
NF1,
BRCA1,
BRCA2,
ERBB3,
ERBB4, and
ALK, have also been detected in TNBC neoplasms (
17).