During January to July 2014, a total of 307 clinical isolates of Enterobacteriaceae were isolated from admitted patients in various hospital wards, including internal wards (n = 181, 59%), surgery (n = 55, 17.9%), intensive care units (n = 37, 12.1%), pediatric (n = 19, 6.2%) and burn (n = 15, 4.9%). The mean age of patient was 52 ± 22 years and 59.3% were females. The bacterial strains isolated included, E. coli (n = 219, 71.3%), K. pneumoniae (n = 57, 18.6%), E. cloacae (n = 14, 4.6%), P. mirabilis (n = 5, 1.6%), K. oxytoca, M. morganii, S. flexneri, S. sonnei, P. vulgaris (two isolates each), S. marcescens and C. freundii (one isolate each). The majority of isolates were predominantly obtained from urine samples (n = 219, 71.3%) while other recovered from blood cultures (n = 43, 14%), burn wound exudates (n = 13, 4.2%), wound purulent discharges (n = 11, 3.6%), tracheal and bronchial secretions (n = 7, 2.3%), sputum (n = 5, 1.6%), stools (n = 4 pathotype strains, 1.3%), abdominal fluid (n = 3, 1%) and cerebro-spinal fluid (n = 2, 0.7%). E. coli was the most common isolate from wards except for burns where K. pneumoniae was the most prevalent isolate.
Based on the initial screening results for possible ESBL, AmpC and carbapenemase production, of total isolates (52.8%) met the criteria and were selected for further confirmatory tests. Overall prevalence of ESBL, AmpC, and carbapenemase-producing strains were 42.7% (131/307), 14% (43/307) and 4.9% (15/307), respectively. Of these, 67.2% (88/131) and 13% (17/131) of ESBL-producing strains, 74.4% (32/43) and 11.6% (5/43) of AmpC-producing strains and 40% (6/15) and 13.3% (2/15) of carbapenemase-producing strains were isolated from urine and blood samples, respectively. The source of remaining carbapenamase-positive strains was burn [four strains (26.7%)], wound [two strains (13.2%)] and sputum [one strain (6.7%)]. The highest prevalence of ESBLs was observed for internal ward (78/131, 59.5%), followed by surgery (21/131, 16%) and ICU (15/131, 11.4%). The AmpC-producing strains were predominantly obtained from internal wards (25/43, 58.1%) followed by surgery (11/43, 27.9%) and ICU (4/43, 9.3%). Among 307 isolates, 38.35% (84/219), 64.9% (37/57) and 35.7% (5/14) of E.coli, K. pneumoniae and E. cloacae isolates were found to be ESBL producers, respectively. These results for AmpCs include 10.5% (23/219) of E. coli and all isolates (100%) of E. cloacae. Nine strains out of 219(4.2%) E.coli isolates were positive for both ESBL and AmpC. AmpC activity was not detected among K. pneumoniae strains based on the phenotypic confirmatory tests. Carbapenemase activity was only observed among fifteen K. pneumoniae strains, detected phenotypes including MBL (9/57, 15.8%), KPC (4/57, 7%), and OXA-48 (2/57, 3.5%). In the current study, all four KPC-producing K. pneumoniae strains were isolated from patients hospitalized in burns (n = 2), surgery (n = 1) and internal (n = 1) wards of Sina hospital of Tabriz. Five out of nine MBL positive strains were isolated from internal (n = 4) and surgery (n = 1) wards of Imam Reza hospital of Tabriz and remaining four strains were isolated from Sina hospital of Tabriz (one isolate from of each ICU, surgery and burns) and Imam Khomeini hospital of Urmia (one Isolate from ICU). We also detected two ESBL positive, OXA-48 producing K. pneumoniae strains from internal and burn wards of Sina hospital.
Of 307 isolates 14(4.6%) were recognized to have ESBL/AmpC hyper producer with decreased cell wall permeability phenotypes based on non-susceptibility to carbapenem (particularly for ertapenem as intermediate), positive ESBL/AmpC confirmatory tests, and carbapenemase confirmatory results. Results of the initial screening and
in-vitro antimicrobial susceptibility patterns of β-lactamase-producing strains are shown in
Table 1 and
2, respectively.
Initial screening for β-lactamase production showed that 45.9% (141/307) of all isolates were ESBL positive. Based on the phenotypic confirmatory tests 42.7% of isolates were ESBL producer. Meropenem, imipenem, amikacin and, ertapenem were the most effective drugs against ESBL/AmpC producers with 91.8%, 91.2%, 88.6%, and 86.8% susceptibilities respectively. The rates of susceptibility against meropenem, imipenem, and ertapenem among all isolates were 95.1%, 94.7%, and 92.5%, respectively. Also piperacillin/tazobactam had good activity with susceptibility rate reaching 71%. On the other hand, susceptibility testing results showed moderate resistance to gentamicin, cefepime, and amoxicillin/clavulanic acid among ESBL/AmpC producers. High rates of resistance were observed against ampicillin, co-trimoxazole, and ciprofloxacin. The prevalence of multidrug resistant β-lactamase-producing isolates was 89.5% based on resistance against more than two antimicrobial classes.
Our knowledge about the occurrence and mechanisms of resistance to antimicrobial agents effectively help to combat drug resistant infections. The current study describes the rates and antimicrobial susceptibility patterns of ESBLs, AmpCs, and carbapenemase-producing members of family
Enterobacteriaceae isolated from various clinical specimens in five major medical centers in East and West Azerbaijan, Iran. In the present study, overall prevalence of ESBLs was 42.7% and the rate of ESBLs among
K. pneumoniae (64
.9%) was more than
E. coli (38.3%). The comparison of our findings with the respective data reported in the global surveillance studies including Tigecycline Evaluation and Surveillance Trial (TEST) and Meropenem Yearly Susceptibility Test Information Collection (MYSTIC) indicated that the prevalence of ESBL producers among
E. coli and
K. pneumoniae isolates was significantly higher in Iran compared to other parts of the world (
20). Based on the data reported in TEST surveillance program in 2006 the rates of ESBL-producing
E. coli and
K. pneumoniae isolates were highest in Latin America (13.5% and 44%) followed by Asia/Pacific Rim (12% and 22.4%), Europe (7.6% and 13.3%) and north America (2.2% and 7.5%), respectively (
20). According to MYSTIC program, the overall occurrence of ESBL-producing
Enterobacteriaceae in Europe in 2006 was 5.6%. By species, it was 8.2% in
E. coli and 9.8% in
Klebsiella spp. (
21). These values are considerable lower than those reported in the current study.
In our study, the prevalence of resistance to third-generation cephalosporins among invasive isolates (isolates from blood and CSF) of
E. coli and
K. pneumoniae was 34.9% and 87.5%, respectively. Comparing these values with the data from recent European Antimicrobial Resistance Surveillance Network (EARS-Net) in 2011 (ranging from 3% to 22% for
E. coli and 2.3% to 60.6% for
K. pneumoniae) explains the high rates of ESBLs among this isolates in Iran. In this respect, our results are only in accordance with data from Slovakia (31%) and Cyprus (36.2%) for
E. coli and those reported from Greece (75.8%) and Bulgaria (81%) for
K. pneumoniae (
22). The main reasons for high occurrence of ESBLs in Iran may be associated with self-medication and overuse of third-generation cephalosporins in hospital settings. Moreover, reported data in this study are relatively lower than those reported by recent studies in neighboring countries such as Turkey (50% and 80%), Pakistan (72% and 66%) and India (57% and 67%) for
E. coli and
K. pneumoniae, respectively (
23-
25).
| Resistance to antimicrobial agents (%)
|
|---|
| Wards (no) | Isolates (no; %) | CTX
| CTR
| CAZ
| CFO
| IMP
| ETP
| MRP
|
|---|
| | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R |
|---|
| ICU (37) | E. coli (24; 64.9) | 62.5 | 4.2 | 33.3 | 62.5 | 4.2 | 33.3 | 79.2 | 8.3 | 12.5 | 100 | | | 100 | | | 100 | | | 100 | | |
| K. pneumoniae (10; 27.0) | 40.0 | | 60.0 | 40.0 | | 60.0 | 40.0 | | 60.0 | 80.0 | | 20.0 | 80.0 | | 20.0 | 70.0 | 10.0 | 20.0 | 80.0 | | 20.0 |
| E. cloacae (3; 8.1) | 66.7 | | 33.3 | 66.7 | | 33.3 | 100 | | | 33.3 | | 66.7 | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | |
| Internal (181) | E. coli (144; 79.6) | 54.9 | 0.7 | 44.4 | 53.5 | 0.7 | 45.8 | 62.5 | 8.3 | 29.2 | 82.6 | 2.8 | 14.6 | 100 | | | 97.9 | 1.4 | 0.7 | 99.3 | 0.7 | |
| K. pneumoniae (25; 13.8) | 24.0 | | 76.0 | 24.0 | | 76.0 | 24.0 | 12.0 | 64.0 | 72.0 | 8.0 | 20.0 | 72.0 | 8.0 | 20.0 | 72.0 | 4.0 | 24.0 | 76.0 | | 24.0 |
| E. cloacae (3; 1.7) | 33.3 | | 66.7 | 33.3 | | 66.7 | 33.3 | | 66.7 | | | 100 | 100 | | | 66.7 | | 33.3 | 100 | | |
| P. mirabilis (3; 1.7) | 100 | | | 100 | | | 100 | | | 100 | | | 66.7 | 33.3 | | 100 | | | 100 | | |
| P. vulgaris (1; 0.6) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| K. oxytoca (1; 0.6) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| S. flexneri (1; 0.6) | | | 100 | | | 100 | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| S. marcescens (1; 0.6) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| k. pneumonia (25; 13.8) | | | | | | | | | | | | | | | | | | | | | |
| M. morganii (1; 0.6) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| C. freundii (1; 0.6) | 100 | | | 100 | | | 100 | | | | | 100 | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | | |
| Surgery (55) | E. coli (37; 67.3) | 51.4 | 2.7 | 45.9 | 48.6 | 2.7 | 48.6 | 59.5 | 2.7 | 37.8 | 91.9 | 2.7 | 5.4 | 100 | | | 100 | | | 100 | | |
| K. pneumoniae (8; 14.5) | 62.5 | | 37.5 | 62.5 | | 37.5 | 62.5 | 12.5 | 25.0 | 62.5 | | 37.5 | 75.0 | 12.5 | 12.5 | 75.0 | | 25.0 | 75.0 | | 25.0 |
| E. cloacae (7; 12.7) | 42.9 | | 57.1 | 42.9 | | 57.1 | 42.9 | | 57.1 | 14.3 | 14.3 | 71.4 | 100 | | | 100 | | | 100 | | |
| P. mirabilis (2; 3.6) | 100 | | | 100 | | | 100 | | | 100 | | | 50.0 | 50.0 | | 100 | | | 100 | | |
| M. morganii (1; 1.8) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | |
| Burns (15) | E. coli (3; 20.0) | 66.7 | | 33.3 | 66.7 | | 33.3 | 66.7 | | 33.3 | 66.7 | | 33.3 | 100 | | | 100 | | | 100 | | |
| K. pneumoniae (11; 73.3) | 9.1 | | 90.9 | 9.1 | | 90.9 | 9.1 | | 90.9 | 63.6 | 18.2 | 18.2 | 72.7 | | 27.3 | 36.4 | 18.2 | 45.5 | 63.6 | 9.1 | 27.3 |
| P. vulgaris (1; 6.7) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | |
| Pediatric (19) | E. coli (11; 57.9) | 72.7 | | 27.3 | 72.7 | | 27.3 | 90.9 | 9.1 | | 100 | | | 100 | | | 100 | | | 100 | | |
| K. pneumoniae (3; 15.8) | 66.7 | | 33.3 | 100 | | | 66.7 | | 33.3 | 100 | | | 100 | | | 100 | | | 100 | | |
| E. cloacae (1; 5.3) | 100 | | | 100 | | | 100 | | | | | 100 | 100 | | | 100 | | | 100 | | |
| K. oxytoca (1; 5.3) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
|
| S. flexneri (1; 5.3) | | | 100 | | | 100 | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| S.sonnei (2; 10.5) | | | 100 | | | 100 | | 100 | | 100 | | | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | | |
| Resistance to antimicrobial agents (%)
|
|---|
| β-lactamases | Isolates (No/total; %) | FEP
| Amp
| AMC
| PIZ
| SXT
| Am
| Gen
| CIP
|
|---|
| S | I | R | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R | S | I | R |
|---|
| ESBL | E. coli (75/219; 34.2) | 52.0 | 14.7 | 33.3 | | | 100 | 82.7 | 14.7 | 2.7 | 90.7 | 6.7 | 2.7 | 24.0 | | 76.0 | 98.7 | | 1.3 | 50.7 | 1.3 | 48.0 | 21.3 | 5.3 | 73.3 |
| K. pneumoniae (37/57; 64.9) | 18.9 | 18.9 | 62.2 | | | 100 | 24.3 | 21.6 | 54.1 | 29.7 | 13.5 | 56.8 | 21.6 | | 78.4 | 56.8 | 16.2 | 27.0 | 24.3 | | 75.7 | 35.1 | 10.8 | 54.1 |
| S. flexneri (2/2; 100) | 100 | | | | | 100 | 100 | | | 100 | | | | | 100 | 100 | | | 50.0 | | 50.0 | 100 | | |
| S. sonnei (2/2; 100) | 100 | | | | | 100 | 100 | | | 100 | | | | | 100 | 100 | | | 50.0 | | 50.0 | 50.0 | | 50.0 |
| | | | | | | | | | | | | | | | | | | | | | | | |
| AmpC | E. coli (14/219; 6.4) | 78.6 | | 21.4 | 7.1 | | 92.9 | 14.3 | | 85.7 | 57.1 | 21.4 | 21.4 | 42.9 | | 57.1 | 92.9 | | 7.1 | 78.6 | | 21.4 | 14.3 | 7.1 | 78.6 |
| E. cloacae (9/14; 64.3) | 88.9 | | 11.1 | 11.1 | | 88.9 | | 22.2 | 77.8 | 100 | | | 66.7 | | 33.3 | 100 | | | 88.9 | | 11.1 | 55.6 | | 44.4 |
| P. mirabilis (2/5; 40.0) | 100 | | | 50.0 | | 50.0 | 100 | | | 100 | | | 50.0 | | 50.0 | 100 | | | 50.0 | 50.0 | | 100 | | |
| S. marcescens (1/1; 100) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| M. morganii (2/2; 100) | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | | | | |
| ESBL+ AmpC | E. coli (9/219; 4.1) | 33.3 | 22.2 | 44.4 | | | 100 | | 66.7 | 33.3 | 22.2 | 66.7 | 11.1 | 11.1 | | 88.9 | 100 | | | 66.7 | | 33.3 | 11.1 | | 88.9 |
| E. cloacae (5/14; 35.7) | 40.0 | | 60.0 | | | 100 | 20.0 | | 80.0 | 100 | | | | | 100 | 100 | | | | | 100 | 40.0 | 40.0 | 20.0 |
| C. freundii (1/1; 100) | 100 | | | | | 100 | | | 100 | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | |
| | | | | | | | | | | | | | | | | | | | | | | | |
| MBL | K. pneumoniae (9/57; 15.8) | | | 100 | | | 100 | | 11.1 | 88.9 | | | 100 | | | 100 | 11.1 | | 88.9 | | | 100 | 11.1 | | 88.9 |
| KPC | K. pneumoniae (4/57; 7.0) | | 25.0 | 75.0 | | | 100 | | | 100 | | | 100 | 50.0 | | 50.0 | 75.0 | | 25.0 | | | 100 | 50.0 | | 50.0 |
| OXA-48 | K. pneumoniae (2/57; 3.5) | | | 100 | | | 100 | | | 100 | | | 100 | | | 100 | | 50.0 | 50.0 | | | 100 | 50.0 | | 50.0 |
| | | | | | | | | | | | | | | | | | | | | | | | | |
| ESBL+ Decreased permeability | E. coli (2/219; 0.9) | | 50.0 | 50.0 | | | 100 | 100 | | | 50.0 | | 50.0 | | | 100 | 100 | | | 50.0 | | 50.0 | 100 | | |
| K. pneumoniae (5/57; 8.8) | 20.0 | 40.0 | 40.0 | | | 100 | | | 100 | | | 100 | | | 100 | 60.0 | 40.0 | | 40.0 | | 60.0 | 60.0 | | 40.0 |
| | | | | | | | | | | | | | | | | | | | | | | | |
| AmpC+ Decreased permeability | E. coli (4/219; 1.8) | 50.0 | 25.0 | 25.0 | | | 100 | 25.0 | | 75.0 | 25.0 | 25.0 | 50.0 | 25.0 | | 75.0 | 100 | | | 50.0 | | 50.0 | 25.0 | | 75.0 |
| E. cloacae (1/14; 7.1) | 100 | | | | | 100 | | 100 | | 100 | | | 100 | | | 100 | | | 100 | | | | | 100 |
| P. mirabilis (2/5; 40.0) | 100 | | | 50.0 | | 50.0 | 100 | | | 100 | | | 50.0 | | 50.0 | 100 | | | 50.0 | 50.0 | | 100 | | |
AmpCs with hydrolyzing activity against narrow, broad and extended-spectrum cephalosporins and cephamycins have been described in many Gram-negative bacilli and their plasmid-mediated types are particularly associated with multidrug resistant. Scarce information are available about the accurate prevalence of these β-lactamases due to the lack of appropriate diagnostic tests, but it appears that the incidence is less than ESBLs (2). According to the results of phenotypic confirmatory tests performed on cefoxitin non-susceptible isolates, 14% of all isolates including
E. coli (10.5%),
and E. cloacae (100%) had detectable AmpC activities. The overall prevalence of AmpCs reported in our study is in complete agreement with a study from India which reported the overall prevalence of 12.5% among
Enterobacteriaceae (
26). Also we found 16 cefoxitin non-susceptible strains out of 57(28%)
K. pneumoniae isolates with negative phenotypic tests for AmpC production. This rate for
E. coli was 29 non-susceptible strains out of 219(13.2%) from which 23(10.5%) strains were AmpC positive. Although these results may indicate the high occurrence of AmpC-producing
E. coli in comparison to other similar studies (
27-
28), the actual incidence of AmpCs remains unknown due to the inability of current phenotypic tests to accurately detect the plasmid-mediated AmpCs (
29). Moreover, sizable number of cefoxitin resistant isolates with negative AmpC confirmatory test or negative PCR previously reported by Manoharan
et al (
26). Cefoxitin resistant isolates with negative AmpC confirmatory test may be due to existence of other unknown mechanisms for this phenomenon.
Emergence of CPE in worldwide is nowadays a main public health concern because of limited therapeutic options and high mortality rate associated with invasive infections due to these isolates. Carbapenemases are diverse versatile β-lactamases with variable hydrolyzing activities against carbapenems and other β-lactam drugs and are often associated with extensive or pan-resistance to several classes of antimicrobials. Until recently, the members of family
Enterobactericeae did not have any significant mechanism for carbapenem resistance but the acquisition of transmissible carbapenemase genes from more resistant organisms such as Pseudomonas and Acinetobacter resulted in that CPE have been recently drawn widespread attention (
30). In our study, carbapenemases were detected only in
K. pneumoniae isolates (26.3%). These results are in agreement with the fact that carbapenamases in
Enterobacteriacae are primarily found in
K. pneumoniae, and to a much lower prevalence in
E. coli and other members of
Enterobacteriacae family (
31). This study shows that the occurrence of CPE is high in East Azerbaijan province of Iran and is comparable to other endemic parts of the world. These results are in consistent with data reported in current studies suggesting that carbapenemases mainly appeared in Asia (
31). According to our results, Sina and Imam Reza hospitals of Tabriz are the endemic foci of CPEs specially KPC and MBL types similar to other part of the world such as Italy and Greece where KPC and MBL are endemic, respectively (
22). Both Sina and Imam Reza hospitals are main educational medical centers of East Azerbaijan province of Iran, receiving diverse populations of complicated patients from surrounding provinces and neighboring republic of Azerbaijan.
According to the antimicrobial susceptibility results, imipenem, meropenem and ertapenem were the most active antibiotics against all isolates particularly all ESBL/AmpC-producing strains. These results are compatible with studies in Turkey and Canada reporting 100%, 100% and 98.0% susceptibilities toward imipenem, meropenem, and ertapenem, respectively (
23,
28 and
32). In this study, susceptibility to imipenem, meropenem and ertapenem among ESBL-producing
K. pneumoniae isolates were 66.7%, 66.7% and 75.4% respectively. Comparing this values with 100% susceptibility to imipenem among inpatient isolates of
K. pneumoniae reported from a study in Tehran and 100% susceptibility to imipenem and meropenem and also 94% susceptibility to ertapenem reported from Istanbul, explains higher occurrence of carbapenemase-producing
K. pneumoniae strains in East Azerbaijan province compared to Tehran and Istanbul (
32-
33). In addition, the majority of carbapenemase-producing
K. pneumoniae isolates (13 out of 15 strains) were resistant to all non-β-lactam antibiotics tested in this study. This is consistent with the fact that many carbapenemase producers carry resistance determinants for structurally unrelated antibacterial drugs (
31).
Based on the in-vitro antimicrobial susceptibility patterns observed in this study, amikacin, piperacillin/tazobactam and amoxicillin/clavulanic acid were second the most potent drugs after carbapenems against ESBL/AmpC-producing E. coli strains with susceptibility rates of 98%, 78.8% and 64.6%, respectively. Gentamicin and cefepime showed moderate activities against these strains with 55.6% and 54.5% susceptibility rates. The highest rates of resistance were observed for ampicillin (99%), ciprofloxacin (80.8%) and co-trimoxazole (74.7%) among ESBL positive E. coli strains. Also, amikacin was found to be second the most active antibiotic against ESBL-producing K. pneumoniae with moderate rate of susceptibility reaching 53.8% on disc diffusion test. Other drugs displayed poor activities among ESBL-producing K. pneumoniae with susceptibility rates ranging from 0.0% for ampicillin to 33.3% for ciprofloxacin.
In the present study, the rate of multidrug resistant β-lactamase-producing
E. coli and
K. pneumoniae was 93.9% and 100%, respectively (P < 0.05). These values was significantly higher than those from annual Canadian Ward surveillance study (CANWARD) reporting 83.3% and 31% MDR rates among ESBL and AmpC-producing
E. coli isolates (
28). This high rate of MDR among β-lactamase-producing isolates explains the high proportion and horizontal dissemination of ESBL, AmpC, and carbapenemase-encoding transferable genetic elements carrying diverse and large number of resistance genes among members of
Enterobaceriacae due to the high selection pressure of resistance to non-β-lactam drugs (
34,
35).