Subjects
Lung biopsy samples were obtained from SM-exposed patients and normal subjects undergoing bronchoscopy for various reasons. The patients were individuals who had a documented encounter with SM during the Iran-Iraq war. Normal subjects were individuals who undergone bronchoscopy for various reasons; however, they didn’t any pulmonary problem after consideration by pulmonologists. Our pulmonologists found them as healthy subjects after carefully considerations of biopsies by H&E staining and also bronchoscopy evaluation. The Ethics review board of the Baqiyatallah University of Medical Sciences approved the study and all subjects signed an informed consent form. Prior to sample collection, demographic and basic clinical characteristics of all subjects including weight, high, BMI, blood pressure, body temperature, and breathe rate were considered. Pulmonary function tests (PFT) including: FVC, FEV1 and FEV1/FVC were also determined by spirometry. In this study, we included patients with moderate lung injury (FEV1 > 50% and FEV1 < 80%; FEV1/FVC > 50% and FEV1/FVC < 80%). Disease severity was determined by combining the current level of symptoms, pulmonary function, and maintenance treatment. Subject who met the following criteria were excluded: other chronic lung diseases (e.g. asthma or allergy), bronchiectasis or pneumonia, cardiovascular disease, autoimmune disease (e.g. rheumatoid arthritis), lung cancer, diabetes mellitus, drug addictions, elderly people (older than 65 years old), smokers, organ transplant recipients and patients with history of occupational pulmonary exposure to other toxic agents. At the time of the examination, all patients were clinically stable and had not experienced any use of anti-inflammatories or antioxidant drugs (e.g. N-acetyl cysteine) for at least one month prior to study. Accordingly, six exposed male patients with moderate SM-lung injury and five healthy male subjects who full-filled the inclusion criteria were enrolled in the study. Mean time after SM exposure among our patients was 27.33 ± 0.57 years. The mean standard ages of patients and controls were 58.0 ± 10.81 and 48.33 ± 24.58 years, respectively.
Lung biopsy specimens
The process of tacking lung biopsies is described previously in our works (
14). Briefly, bronchoscopy was performed under O
2 saturation at 5 L/min by nasal catheter. All subjects were premedicated intramuscularly with atropine (0.5 mg) and diazepam (10 mg) and orally with dihydrocodein (10 mg). Nares and oropharynx were topically anesthetized with 10% lidocaine before bronchoscopy. After local anesthesia, the flexible fiberoptic bronchoscope (PENTAX, EPK-100p, with a 2.0 mm diameter channel) was introduced and tissue samples were taken using bronchoscopic forceps (Olympus). All biopsy specimens were taken at the origin of the bronchial subcarinal segments. Vital signs, electrocardiograph (EKG) output and oximetry were recorded throughout the procedure. All bronchoscopy procedures were performed by the same experienced bronchoscopist surrounded by the same research team. Three biopsy samples were taken from each patient, and were immediately immersed in RNA Later reagent (R0901 SIGMA, USA). The samples in RNA Later reagent were stored at −80 °C until RNA extraction.
RNA extraction
Total RNA was isolated from lung biopsy samples using the RNX-Plus (SinaClon; RN7713C) Kit and then further purified by RNeasy Mini Kit (Qiagen; Cat No-74104), according to the manufacturer’s instructions. The quantity and quality of extracted RNA were determined using the Nanodrop ND-1000 spectrophotometer (Thermo Sci., Newington, NH). Electrophoresis a fraction of each RNA sample on 1% denaturing agarose gel stained with ethidium bromide was used to analyze the quality of the RNA samples. The isolated RNA was stored at −80 °C for the further considerations.
Comparison of FOXM1 and APOE genes expression between control and SM-exposed groups by fold-change. The expression of FOXM1 and APOE genes in the bronchial of patients was significantly (p < 0.001) higher than in controls. *p < 0.05 is considered as significant difference
Fold changes ratio of the FOXM1 and APOE expression in patients to the controls. SM-exposed patients showed expression of FOXM1 14.8316 and APOE 3.9504-folds higher (p = 0.000624 and p = 0.000877, respectively) than those of controls that reveal
Comparison of FOXM1 and APOE expression between controls and SM-exposed patients by 2˄ (-Delta (Ct)). All RT-PCR experiments were performed in three independent experiments conducted in triplicate. Based on gene 2˄ (-Delta (Ct)), the expression of FOXM1 and APOE genes in lung tissue of the patients was significantly (p < 0.001) higher than in controls. *p <0.05 is considered as significant difference
Increased expression of FOXM1 and APOE genes is likely linked to overproduction of ROS and OS in mustard lungs that may increase risk of lung cancer among these patients. SM: sulfur mustard; ROS: reactive oxygen species; OS: oxidative stress; APOE: apolipoprotein E; FOXM1: Forkhead box M1
Measuring gene expression using the PCR Array
Changes in expression of
FOXM1 and
APOE genes in the bronchial of all samples were measured using RT
2Profiler™ PCR Array (Qiagen; PAHS-065ZA-6), as it described in our previous study (
14). It consisted of the following steps: a) Clean-up of the isolated RNA in order to remove contaminating DNA followed by cDNA synthesis using RT
2 First Strand Kit, b) Confirmation of the presence of cDNA in the samples using human RT
2 RNA QC PCR Array, c) Quantitative analysis of gene expression in the samples using RT
2 Profiler™ PCR Array, including an ABI7500 cycler and RT
2 SYBR Green/ROX qPCR Master Mix, d) Data analysis using the ΔΔCt method, including RT
2 Profiler PCR Array data analysis software version 3.5 (http://pcrdataanalysis.sabiosciences.com/pcr/arrayanalysis.php).
After RNA extraction, cDNA was synthesised from the equal amounts of RNA (1 μg) using the RT2 First Strand kit (Qiagen; Cat No-330401). An equal amount of cDNA was mixed with RT2 SYBR Green/ROX qPCR Mastermix (QIAGEN Company, Cat No: 330522), and distributed to each PCR array well containing portions of specific genes. PCR of study genes was performed in 96-well plates, according to manufacturer’s instructions. This array contained 12 control genes, including five housekeeper genes for normalization: Actin beta (ACTB), Beta-2-microglobulin (B2M), Glyceraldehyde-3-phosphate dehydrogenase (GADPH), Hypoxanthine phosphoribosyl transferase 1 (HPRT1), Ribosomal protein, large, P0 (RPLP0), as well as one negative control to monitor the human genomic DNA contamination (HGDC). Three reverse transcription control (RTC) wells were used to check for RT reaction efficiency with qPCR test. The PCR array also contained three wells of positive PCR controls (PPCs) to determine the efficiency of the polymerase chain reaction. These controls use an artificial DNA sequence predefined in the detection process. Replicated control wells (RTC and PPC) also assess the consistency among wells and plates.
Statistical analysis
An independent t-test was considered to compare each of the parametric data between two groups using SPSS software (IBM, version 19). A probability of less than 0.05 was considered as significant. Biological relevance of differently expressed genes was investigated using RT2 Profiler PCR Array Data Analysis software, version 3.5 (http://pcrdataanalysis.sabiosciences.com/pcr/arrayanalysis.php). The Wilcoxon–Mann–Whitney test was applied to validate the homogeneity of the reaction of expression of each gene (p < 0.05). For comparison between the two groups, the software calculated the quantification cycle threshold (Ct) of the patient group (IRG) in relation to the Ct of the control group (CG) expressed in the logarithm basis. The gene expression results are shown as positive/upregulation expression (IRG higher than CG) or negative/downregulation expression (IRG lower than CG).