Chemistry
All chemicals used in this study were purchased from Aldrich and Fluka (Steinheim, Germany). All reactions were carried out in Discover Microwave Apparatus (CEM). Thin layer chromatography (TLC) was run on Merck aluminium sheets (Darmstadt, Germany), Silica gel 60 F254, mobile phase ethyl acetate-hexane: (1:1) and ultraviolet (UV) absorbing spots were detected by short-wavelength (254 nm) UV light (Camag UV Cabinet, Wiesloch, Germany). Melting points were determined on a Thomas Hoover Capillary Melting Point Apparatus (Philadelphia, PA, USA) and were uncorrected. 1H-NMR spectra were obtained in dimethyl sulfoxide (DMSO) solutions on a Varian Mercury 400, 400 MHz High Performance Digital FT-NMR Spectrometer (Palo Alto, CA, USA). Chemical shifts are reported in parts per million (ppm) relative to tetramethylsilane. The ESI-MS spectra were measured on a micromass ZQ-4000 single quadruple mass spectrometer. Elemental analyses were performed on a Leco CHNS-932 Elemental Analyzer (Philadelphia, PA, USA).
Synthesis of tetrahydrothiophene-3-one-1,1-dioxide:
Tetrahydrothiophen-3-one (0.1 mol), triethyl orthoformate (0.1 mol), p-toluensulfonic acid (0.26 mmol) and 2 mL ethanol was stirred for 20 h. The mixture was treated with anhydrous sodium acetate (4 mmol), sodium tungstate dehydrate (0.00085 mmol) and 28 mL water. 28 mL of a 35 % solution of hydrogen peroxide in water was added dropwise while keeping the reaction cooled to 30
°C. After stirring overnight at room temperature, the resulting product was filtered and washed with water to achieve 3,3-diethoxytetrahydrothiephene-1,1-dione. The product was stirred in a mixture of HCl and water at 60 °C for 2 h. The mixture was extracted with dichloromethane (60 mL). The dichloromethane layer was isolated and dried with MgSO
4, filtered and concentrated. The residue was crystallized from ethanol to provide tetrahydrothiophene-3-one-1,1-dioxide (
29).
General procedure for the preparation of 8-(disubstituted phenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2´,3´-e]pyridine-1,1,7,7-tetraoxide (Compound 1-6):
One-pot three component mixture of 2 mmol tetrahydrothiophene-3-one-1,1-dioxide, 1 mmol appropriate disubstituted benzaldehyde and 5 mmol ammonium acetate was filled into 10 mL-microwave pressure vial and heated under microwave irradiation (power 75 W, maximum temperature 130 °C) for 5 min in 5 mL ethanol. After the reaction was completed, the reaction mixture was poured into ice-water, the obtained precipitate was filtered and crystallized from ethanol-water.
General procedure for the preparation of 7,7-Dimethyl-9-(disubstituted phenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compound 7-12):
1 mmol tetrahydrothiophene-3-one-1,1-dioxide, 4,4-dimethyl-1,3-cyclohexanedione, 1 mmol appropriate disubstituted benzaldehyde and 5 mmol ammonium acetate were filled into 10 mL-microwave pressure vial and heated under microwave irradiation (power 75 W, maximum temperature 130 °C) for 5 min in 5 mL ethanol. After the reaction was completed, the solvent (ethanol) was removed via a rotary evaporator and the crude product was then purified by column chromatography using silica gel as the solid phase and a 7:3 mixture of ethyl acetate: methanol as mobile phase.
8-(2-chloro-5-nitrophenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2’,3’-e]pyridine-1,1,7,7-tetraoxide (Compond 1)
Yield: 82%. m.p. 248-250 oC. IR (ν, cm-1): 3337 (N-H), 1638 (C=O), 1355, 1129 (S=O). 1H-NMR (δ, DMSO-d6): 2.18-3.51 (8H; m; H2,3,5,6), 4.61 (H; s; H8), 6.32 (H; s; NH), 7.81 (1H; d; J: 8.4 Hz; Ar-H3), 8.16 (1H; dd; J: 2.8 / 8.4 Hz; Ar-H4), 8.30 (1H; d; J: 2.8 Hz; Ar-H6), ESI-MS (m/z): 439.99 [M+1+Na]+, 438.99 [M+Na]+ (100%). Anal. Calcd. for C15H13ClN2O6S2: C, 43.22; H, 3.14; N, 6.72; S, 15.38. Found: C, 43.23; H, 3.12; N, 6.76; S, 15.32.
8-(2-nitro-5-chlorophenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2´,3´-e]pyridine-1,1,7,7-tetraoxide (Compond 2)
Yield: 76%. m.p. 232-234 oC. IR (ν, cm-1): 3345 (N-H), 1632 (C=O), 1289, 1096 (S=O). 1H-NMR (δ, DMSO-d6): 2.22-3.38 (8H; m; H2,3,5,6), 4.52 (H; s; H8), 5.92 (H; s; NH), 7.45 (1H; d; J: 2.4 Hz; Ar-H6), 7.98 (1H; dd; J: 2.4 / 8.8 Hz; Ar-H4), 8.30 (1H; d; J: 8.8 Hz; Ar-H3), ESI-MS (m/z): 439.99 [M+1+Na]+, 438.99 [M+Na]+ (100%). Anal. Calcd. for C15H13ClN2O6S2: C, 43.22; H, 3.14; N, 6.72; S, 15.38. Found: C, 43.25; H, 3.15; N, 6.70; S, 15.40.
8-(2,5-dichlorophenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2´,3´-e]pyridine-1,1,7,7-tetraoxide (Compond 3)
Yield: 78%. m.p. 224-226 oC. IR (ν, cm-1): 3332 (N-H), 1655 (C=O), 1284, 1125 (S=O). 1H-NMR (δ, DMSO-d6): 2.10-3.38 (8H; m; H2,3,5,6), 4.49 (H; s; H8), 5.86 (H; s; NH), 7.32 (1H; dd; J: 2.4 / 8.8 Hz; Ar-H4), 7.57 (1H; d; J: 8.8 Hz; Ar-H3), 8.14 (1H; d; J: 2.4 Hz; Ar-H6), ESI-MS (m/z): 428.96 [M+1+Na]+, 427.96 [M+Na]+ (100%). Anal. Calcd. for C15H13Cl2NO4S2: C, 44.34; H, 3.23; N, 3.45; S, 15.78. Found: C, 44.37; H, 3.25; N, 3.45; S, 15.75.
8-(2,3-dichlorophenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2’,3’-e]pyridine-1,1,7,7-tetraoxide (Compond 4)
Yield: 78%. m.p. 252-254 oC. IR (ν, cm-1): 3339 (N-H), 1683 (C=O), 1304, 1132 (S=O). 1H-NMR (δ, DMSO-d6): 2.15-3.48 (8H; m; H2,3,5,6), 4.58 (H; s; H8), 7.29 (1H; t; J: 7.6 Hz; Ar-H5), 7.45 (1H; dd; J: 1.2 / 7.6 Hz; Ar-H4), 7.55 (1H; dd; J: 1.2 / 8 Hz; Ar-H5), 7.95 (H; s; NH). ESI-MS (m/z): 428.96 [M+1+Na]+, 427.96 [M+Na]+ (100%). Anal. Calcd. for C15H13Cl2NO4S2: C, 44.34; H, 3.23; N, 3.45; S, 15.78. Found: C, 44.30; H, 3.24; N, 3.43; S, 15.72.
8-(2-fluoro-3-chlorophenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2´,3´-e]pyridine-1,1,7,7-tetraoxide (Compond 5)
Yield: 75%. m.p. 218-220 oC. IR (ν, cm-1): 3341 (N-H), 1675 (C=O), 1287, 1127 (S=O). 1H-NMR (δ, DMSO-d6): 2.18-3.42 (8H; m; H2,3,5,6), 4.50 (H; s; H8), 7.35 (1H; dd; J: 1.2 / 8.0 Hz; Ar-H4), 7.48 (1H; t; J: 8.0 Hz; Ar-H5), 7.60 (1H; dd; J: 1.2/ 8 Hz; Ar-H6), 7.87 (H; s; NH). ESI-MS (m/z): 412.99 [M+1+Na]+, 411.99 [M+Na]+ (100%). Anal. Calcd. for C15H13ClFNO4S2: C, 46.21; H, 3.36; N, 3.59; S, 16.45. Found: C, 46.23; H, 3.34; N, 3.61; S, 16.42.
8-(2-chloro-3-trifluoromethylphenyl)-2,3,4,5,6,8-hexahydrodithieno[3,2-b:2´,3´-e]pyridine-1,1,7,7-tetraoxide (Compond 6)
Yield: 77%. m.p. 235-237 oC. IR (ν, cm-1): 3338 (N-H), 1687 (C=O), 1315, 1136 (S=O). 1H-NMR (δ, DMSO-d6): 2.11-3.23 (8H; m; H2,3,5,6), 4.53 (H; s; H8), 7.25 (1H; t; J: 8.0 Hz; Ar-H5), 7.45 (1H; dd; J: 1.2 / 8.0 Hz; Ar-H6), 7.55 (1H; dd; J: 1.2/ 8 Hz; Ar-H4), 7.90 (H; s; NH). ESI-MS (m/z): 462.99 [M+1+Na]+, 461.99 [M+Na]+ (100%). Anal. Calcd. for C16H13ClF3NO4S2: C, 43.69; H, 2.98; N, 3.18; S, 14.58. Found: C, 43.66; H, 2.99; N, 3.15; S, 14.61.
7,7-Dimethyl-9-(2-chloro-5-nitrophenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compond 7)
Yield: 68 %. m.p. 235-237 oC. IR (ν, cm-1): 3354 (N-H), 1245, 1084 (S=O). 1H-NMR (δ, DMSO-d6): 0.86 (3H; s; 7-CH3), 1.01 (3H; s; 7-CH3), 1.72-3.36 (8H; m; H2,3,5,6), 4.89 (H; s; H9), 7.25 (1H; d; J: 9,2 Hz; Ar-H3), 7.82 (1H; dd; J: 2,4 / 9,2 Hz; Ar-H4), 7.95 (1H; d; J: 2,4 Hz; Ar-H6), 9.78 (H; s; NH). ESI-MS (m/z): 446.11 [M+1+Na]+, 445.11 [M+Na]+ (100%). Anal. Calcd. for C19H19ClN2O5S: C, 53.97; H, 4.53; N, 6.62; S, 7.78. Found: C, 53.95; H, 4.55; N, 6.65; S, 7.80.
7,7-Dimethyl-9-(2-nitro-5-chlorophenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compond 8)
Yield: 68 %. m.p. 225-227 oC. IR (ν, cm-1): 3365 (N-H), 1304, 1133 (S=O). 1H-NMR (δ, DMSO-d6): 0.83 (3H; s; 7-CH3), 0.94 (3H; s; 7-CH3), 1.53-3.38 (8H; m; H2,3,5,6), 5.12 (H; s; H9), 7.45 (1H; d; J: 8.8 Hz; Ar-H3), 7.88 (1H; d; J: 2.4 Hz; Ar-H6), 8.23 (1H; dd; J: 2.4 / 8.8 Hz; Ar-H4), 9.32 (H; s; NH). ESI-MS (m/z): 446.07 [M+1+Na]+, 445.07 [M+Na]+ (100%). Anal. Calcd. for C19H19ClN2O5S: C, 53.97; H, 4.53; N, 6.62; S, 7.78. Found: C, 53.94; H, 4.52; N, 6.62; s, 7.76.
7,7-Dimethyl-9-(2,5-dichlorophenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compond 9)
Yield: 76 %. m.p. 252-254 oC. IR (ν, cm-1): 3341 (N-H), 1288, 1093 (S=O). 1H-NMR (δ, DMSO-d6): 0.90 (3H; s; 7-CH3), 1.00 (3H; s; 7-CH3), 1.68-3.42 (8H; m; H2,3,5,6), 5.21 (H; s; H9), 7.05 (1H; d; J: 7.6 Hz; Ar-H3), 7.28 (1H; d; J: 2,4 Hz; Ar-H6), 7.61 (1H; dd; J: 2,4 / 8,4 Hz; Ar-H4), 9.59 (H; s; NH). ESI-MS (m/z): 435.04 [M+1+Na]+, 434.04 [M+Na]+ (100%). Anal. Calcd. for C19H19Cl2NO3S: C, 55.35; H, 4.64; N, 3.40; S, 7.78. Found: C, 55.38; H, 4.64; N, 3.38; S, 7.75.
7,7-Dimethyl-9-(2,3-dichlorophenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compound 10)
Yield: 72 %. m.p. 265-267 oC. IR (ν, cm-1): 3346 (N-H), 1305, 1125 (S=O). 1H-NMR (δ, DMSO-d6): 0.84 (3H; s; 7-CH3), 0.96 (3H; s; 7-CH3), 1.75-3.44 (8H; m; H2,3,5,6), 5.30 (H; s; H9), 7.17 (1H; dd; J: 1.6 / 8 Hz; Ar-H4), 7.22 (1H; t; J: 8 Hz; Ar-H5), 7.38 (1H; dd; J: 1.6 / 8 Hz; Ar-H6), 9.76 (H; s; NH). ESI-MS (m/z): 435.04 [M+1+Na]+, 434.04 [M+Na]+ (100%). Anal. Calcd. for C19H19Cl2NO3S: C, 55.35; H, 4.64; N, 3.40; S, 7.78. Found: C, 55.31; H, 4.66; N, 3.43; s, 7.72.
7,7-Dimethyl-9-(2-fluoro-3-chlorophenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compound 11)
Yield: 70 %. m.p. 216-218 oC. IR (ν, cm-1): 3365 (N-H), 1299, 1075 (S=O). 1H-NMR (δ, DMSO-d6): 0.82 (3H; s; 7-CH3), 0.91 (3H; s; 7-CH3), 1.95-3.38 (8H; m; H2,3,5,6), 5.32 (H; s; H9), 7.20 (1H; dd; J: 2.0 / 8.4 Hz; Ar-H4), 7.34 (1H; t; J: 8.4 Hz; Ar-H5), 7.42 (1H; dd; J: 2.0 / 8.4 Hz; Ar-H6), 9.85 (H; s; NH). ESI-MS (m/z): 389.07 [M+1+Na]+, 388.07 [M+Na]+ (100%). Anal. Calcd. for C19H19ClFNO3S: C, 57.65; H, 4.84; N, 3.54; S, 8.10. Found: C, 57.69; H, 4.86; N, 3.53; S, 8.12.
7,7-Dimethyl-9-(2-chloro-3-trifluoromethylphenyl)-2,3,5,6,7,9-hexahydrothieno[3,2-b]quinolin-8(4H)-one, 1,1-dioxide (Compound 12)
Yield: 82%. m.p. 241-243 oC. IR (ν, cm-1): 3346 (N-H), 1355, 1129 (S=O). 1H-NMR (δ, DMSO-d6): 0.80 (3H; s; 7-CH3), 0.89 (3H; s; 7-CH3),1.62-3.14 (8H; m; H2,3,5,6), 5.22 (H; s; H9), 7.34 (1H; dd; J: 1.6 / 7.6 Hz; Ar-H4), 7.52 (1H; t; J: 7.6 Hz; Ar-H5), 7.67 (1H; dd; J: 1.6 / 7.6 Hz; Ar-H6), 9.75 (N-H). ESI-MS (m/z): 469.05 [M+1+Na]+, 468.05 [M+Na]+ (100%). Anal. Calcd. for C20H19ClF3NO3S: C, 53.88; H, 4.30; N, 3.14; S, 7.19. Found: C, 53.90; H, 4.31; N, 3.16; S, 7.21.
Pharmacology
The study protocol was approved by Hacettepe University Animal Ethics Committee (2012-54/02)
Male Sprague-Dawley rats (250-350 g) were used in the present study. The rats were euthanized by CO2 inhalation and decapitation. The superior mesenteric arteries and the urinary bladders were isolated and placed in a Krebs-Henseleit solution. The composition of the Krebs-Henseleit solution was (in mM ): NaCI, 113; KCI, 4.7; MgSO4, 1.2; CaCI2, 2.5; KH2PO4, 1.2; NaHCO3, 25.0; and glucose, 11.6. The solution was gassed with a mixture of 95% O2- 5% CO2 and maintained at 37 °C and pH 7.4. Pinacidil monohydrate, glibenclamide, tetraethylammonium chloride were purchased from Sigma (St. Louis. MO).
Preparation of the tissues
Superior mesenteric artery: The superior mesenteric artery was cut into rings of 2-3 mm length. No attempt was made to remove the endothelium. The rings were suspended between two stainless-steel hooks under a resting tension of 1g in 5 mL organ baths filled with Krebs-Henseleit solution.
Urinary bladder:
Urinary bladder strips about 1.5 mm wide and 10 mm long were prepared and were mounted under a resting tension of 1 g in 5 mL organ-baths filled with Krebs-Henseleit solution. Urothelium was not removed from the bladder strips.
Isometric changes in the tension were measured and recorded with an isometric force transducer, Biopac data acquisition system MP150 and Acknowledge 4.2 software. Tissues were equilibrated for 1.5 h and washed by Krebs-Henseleit solution every 15 min before each experimental procedure.
Experimental procedure
Superior mesenteric artery:
Three-ring preparations were obtained from each mesenteric artery, and the rings were used to elicit the relaxation response to each test compound either in the absence or in the presence of the antagonists; ATP-sensitive potassium channel blocker glibenclamide (10 µM) or calcium-activated potassium channel blocker tetraethylammonium (TEA) (1000 µM).
At the beginning of each experiment, after priming with KCI (60 mM) and one hour washout period, mesenteric artery rings were contracted to approximately 80% of the maximum contraction to phenylephrine (1 µM). When the contraction had plateaued, the relaxation response to cumulative concentrations of the test compound (10-8-10-4 M) was determined. The antagonists used were incubated for 30-min before obtaining the relaxation response to the test compound. Concentration-response curve to each compound was obtained in individual preparations.
Synthesis of tetrahydrothiophene-3-one-1,1-dioxide
Synthesis of compound 1-12
Representative traces showing concentration dependent relaxant effect of compound 9 (10-8-10-4) in precontracted rat mesenteric artery rings (A) and precontracted rat urinary bladder strips (B
Concentration-response curves for the relaxant effect of compound 9 in precontracted rat mesenteric artery rings in the absence or presence of glibenclamide or TEA
Binding conformation of compound 9 and the space occupied in the 1BL8 binding pocket (A) and Color-coded pharmacophore features and interactions of compound 9: hydrophobic interaction (yellow sphere), hydrogen bond acceptor (red vector), hydrogen bond donor (green vector
| Compound | Emax
| pD2
|
|---|
| Control | Glibenclamide | TEA | Control | Glibenclamide | TEA |
|---|
| Pinacidil | 101.54 ± 0.96 | 93.25 ± 5.42 | | 6.18 ± 0.11 | 4.64 ± 0.34a | |
| 1 | No effect | - | - | - | - | - |
| 2 | No effect | - | - | - | - | - |
| 3 | 13.85 ± 3.23* | - | - | 3.50 ± 1.58* | - | - |
| 4 | 38.32 ± 6.75* | - | - | 1.38 ± 0.10* | - | - |
| 5 | 22.40 ± 2.91* | - | - | 1.83 ± 1.18* | - | - |
| 6 | 23.07 ± 8.11* | - | - | 1.41 ± 1.20* | - | - |
| 7 | 30.46 ± 6.52* | - | - | 6.22 ± 0.46 | - | - |
| 8 | 53.05 ± 2,52* | - | - | 7.87 ± 1,23 | - | - |
| 9 | 89.01 ± 3.60* | 67.12 ± 6.21a | 91.31 ± 3.42 | 4.99 ± 0.16* | 2.62 ± 1.12a | 4.93 ± 0.08 |
| 10 | 72.82 ± 2.78 * | 39,79 ± 7,71a | 70.12 ± 2,34 | 5.14 ± 0.08* | 4.41 ± 0.29a | 4.98 ± 0.02 |
| 11 | 77.62 ± 4.84* | 49.88 ± 6.17a | 73.82 ± 6.41 | 4.69 ± 0.13* | 3.51 ± 0.77a | 4.45 ± 0.19 |
| 12 | 62.73 ± 6.36* | 35.70 ± 8.14a | 63.49 ± 7.13 | 5.07 ± 0.20* | 3.01 ± 1.25a | 3.75 ± 1.31 |
Significantly different from pinacidil p0.05.
Significantly different from Emax, pD2 values of test compounds and pinacidil in the absence of glibenclamide p0.05.
| Compound | Slog pa | ASA_Pb | logSc | Solubility Leveld | HIAe | CYP2D6f |
|---|
| 9 | 4.35 | 92.397 | -4.887 | 2 | 0 | Non inhibitor |
| 10 | 4.35 | 88.932 | -4.887 | 2 | 0 | Non inhibitor |
| 11 | 3.83 | 92.932 | -4.448 | 2 | 0 | Non inhibitor |
| 12 | 4.51 | 181.392 | -5.210 | 2 | 0 | Non inhibitor |
| Compound | Number of HBA | Number of HBD | Slog p | Molecular Weight |
|---|
| 9 | 3 | 1 | 4.35 | 412.33 |
| 10 | 3 | 1 | 4.35 | 412.33 |
| 11 | 3 | 1 | 3.83 | 395.88 |
| 12 | 3 | 1 | 4.51 | 445.88 |
Urinary bladder:
Two-longitudinal strips were prepared from each urinary bladder and the concentration-dependent relaxation response to the test compound was obtained either in the absence or in the presence of 10 µM glibenclamide.
The bladder strips were precontracted with 0.1 µM carbachol to obtain submaximal contraction, and after the contractile response reached plateau, the increasing concentrations of test compound (10-8-10-4 M) was added to the organ bath in a cumulative manner. Concentration-response curve to each test compound was obtained in individual preparations.
Statistical analysis
The relaxation responses to the test compounds and pinacidil were expressed as the percentage of phenylephrine (for mesenteric artery rings) and carbachol (for urinary bladder strips)-induced precontractions.
The maximum response (Emax) as the efficacy, and the pD2 values ( the negative logarithm of the concentration of the compound producing 50 % (EC50) of the maximum relaxation) as the potency index were calculated from each concentration-response curve.
Stock solutions of the compounds were dissolved in dimethyl sulphoxide (DMSO). Final concentration of DMSO in the bath did not exceed 0.05%. Further dilutions were made in distilled water.
Data are represented as mean±standard error of mean (SEM). Statistical analysis was done by Student’s t test and analysis of variance (ANOVA) followed by the Bonferroni test by using GraphPad Prism5 software. P<0.05 was considered as significant.
Computational methodology
Molecular Docking Studies
Ligand Preparation
The chemical formulas of the compounds were drawn in Chembiodraw Ultra 12.0 and saved as Simplified Molecule Input Entry System (SMILES) file. The file was transfered to LigandScout 3.1. (
30) in order to prepare the appropriate file needed for the docking study. For this purpose, the structures were geometrically optimized and energy minimized to 3D structure using the MMFF94x force field in LigandScout 3.1.
Protein preparation
The reported X-ray crystal structure of potassium channel receptor (KcsA) of Streptomyces lividans (PDB code: 1BL8), an integral membrane protein with sequence similarity to all known K
+ channels, was obtained from the Protein Data Bank of Brookhaven (PDB, www.rcsb.org/pdb) (
31). The structure of the protein was transferred to GOLD (Genetically Optimized Ligand Docking) and prepared by removing water molecules and metal ions and adding hydrogen atoms before docking.
Docking procedure
The binding region was identified by the help of recent studies about the same protein (
9,
31,
32). Docking runs were performed using standard default parameters. Ten docking poses were obtained for each ligand and the scoring function GoldScore implemented in GOLD was used to rank the docking poses of the molecules. LigandScout was used for the further analysis of the conformation of molecules based on the best fitness scores.
ADME and drug likeness prediction
The ADME of compound 9-12 was predicted via a theoretical study that performed by means of MOE (Chemical Computing Group) and PreADMET (http://preadmet.bmdrc.org/). logP and ASA_P descriptors were calculated to evaluate the lipophilicity and polar surface area. Also, solubility and CYP2D inhibition levels were predicted. Lipinski’s “rule of five” has been also calculated as an attempt to predict the drug likeness of the active compounds by the help of ligand properties tool implemented in MOE.