General experimental procedures
Phytochemical profile, essential oil and fatty acid compositions were determined by using Shimadzu UHPLC ESI MS/MS and GC/MS instruments, respectively. A Thermo pH-meter, Gel documentation System (Gel-Doc-XR, BioRad, Hercules, CA, USA), an Elma S15 ultrasonic bath,Horizontal electrophoresis (Biorad), Horizontal electrophoresis power supply (Wealtec), Shimadzu UV Spectrophotometer, a BioTek Power Wave XS and a vortex (LMS Co. LTD) were used for the activity assays. Ethanol, hexane, diethyl ether, chloroform, toluene, dichloromethane, methanol, potassium acetate, BHT (butylated hydroxytoluene) (purity ≥99%), sulphuric acid, aluminium nitrate nonahydrate, aluminium chloride, ABTS (2,2′-Azinobis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt) (97.5%), K2S2O8, sodium acetate, nutrient broth, boric acid, nutrient agar, NaHCO3 were purchased from Merck (Germany), (L)-malic acid (95-100%), quercetin (95%), protocatechuic acid (97%), chrysin (97%), rutin (94%), hesperetin (95%), naringenin (95%), rosmarinic acid (96%), vanillin (99%), p-coumaric acid (98%), caffeic acid (98%), chlorogenic acid (95%), hyperoside (≥97%), myricetin (≥96%), coumarin (≥99%), kaempferol (≥97%), 2,2-diphenyl-1-picrylhydrazyl (DPPH) (≥95%), β-carotene (≥93%), linoleic acid (≥99%), H2O2, Tween 40, pyrocathecol (≥99%), acetic acid, sodium methoxide, gel loading dye, DTNB (5,5-dithiobis-(2-nitro benzoic acid)) (≥98%), copper (II) chloride dihydrate (CuCl2.2H2O) (≥99%), neocuproine (2,9-dimethyl-1,10-phenanthroline) (≥98%), EDTA (≥98%), acetylcholinesterase, butyrylcholinesterase, trisma base, galanthamine hydrobromide (≥94%) from Sigma (Germany), α-tocopherol (≥95.5%), acetylthiocholine iodide (≥98%) from Aldrich (Germany), quinic acid (98%), tr-aconitic acid (98%), 4-hydroxybenzoic acid (≥99%) and fisetin (≥98%) were from Aldrich (Germany), gallic acid (≥99%), tannic acid (puris), salicylic acid (≥99%) were from Sigma-Aldrich (Germany), Folin Ciocalteu Phenol reagent from Applichem (Germany), hesperidin (≥97%), luteolin (≥97%), apigenin (≥99%), rhamnetin (≥99%), butyrylthiocholine iodide (≥99%) from Fluka (Germany), steril blank disc and antbiotic disc from Oxoid (United Kingdom), acetone, petroleum ether, sodium carbonate, sodium dihydrogen phosphate, sodium hydrogen phosphate, ammonium acetate from Reidel de Haen (Germany).
Plant material
S. Demirci collected and identified the plant material from southern Turkey (Andırın, Kahramanmaraş) in June 2012. A sample was deposited in the Herbarium of Istanbul University (ISTE 97137).
Preparation of plant extracts for UHPLC-ESI-MS/MS
The dried and powdered plants (10 g) were extracted separately with MeOH and acetone about 24 h at room temperature. The extracts were filtrated and evaporated under vacuum. Dry filtrates diluted until 250 mg/L and passed through 0.2 µM microfiber filter for UHPLC-ESI-MS/MS.
Instruments and Chromatographic Conditions
LC-MS/MS analyses of the twenty seven compounds were performed by using a Nexera model Shimadzu UHPLC coupled to a tandem MS instrument. The liquid chromatograph was equipped with LC-30AD binary pumps, DGU-20A3R degasser, CTO-10ASvp column oven and SIL-30AC autosampler. The chromatographic seperation was performed on a C18 reversed-phase Inertsil ODS-4 (150 mm × 4.6 mm, 3µM) analytical column. The column temperature was fixed at 40 ° C. The elution gradient consisted of mobile phase A (water, 5mM ammonium formate and 0.1% formic acid) and mobile phase B (methanol, 5mM ammonium formate and 0.1% formic acid). The gradient program with the following proportions of solvent B was applied t (min), %B: (0, 40), (20, 90), (23.99, 90), (24, 40), (29, 40). The solvent flow rate was maintained at 0.5 mL/min and injection volume was settled as 4 µL.
MS Instrumentation
MS detection was performed using Shimadzu LC-MS 8040 model triple quadrupole mass spectrometer equipped with an ESI source operating in both positive and negative ionization modes. LC-MS/MS data were collected and processed by LabSolutions software (Shimadzu, Kyoto, Japan). The multiple reaction monitoring (MRM) mode was used to quantify the analytes: the assay of investigated compounds was performed following two or three transitions per compound, the first one for quantitative purposes and the second and/or the third one for confirmation.
Optimization of UHPLC-MS/MS Method
Subsequent to several combinations of trials, a gradient of methanol (5 mM ammonium formate and 0.1% formic acid) and water (5mM ammonium formate and 0.1% formic acid) system was concluded to be the best mobile phase solution. For rich ionization and the seperation of the molecules, the mentioned mobile phase was proved to be the best of all. ESI source was chosen instead of APCI (Atmospheric Pressure Chemical Ionization) and APPI (Atmospheric Pressure Photoionization) sources as the phenolic compounds were small and relatively polar molecules. Tandem mass spectrometry was decided to be used for the current study since this system is commonly used for its fragmented ion stability. The working conditions were determined as interface temperature; 350 ° C, DL temperature; 250 ° C, heat block temperature; 400 ° C, nebulizing gas flow (Nitrogen); 3 L/min and drying gas flow (Nitrogen); 15 L/min.
Esterification of total fatty acids and GC/MS conditions
Esterification of petroleum ether extract of
V. pinetorum was done according to the report of Ertaş
et al. (
19). In this study, Thermo Scientific Polaris Q GC-MS/MS was used. GC-MS study conditions, identification and quantification of the compounds comparison were done exactly same manner according to Ertaş
et al. (
19).
Isolation of essential oil and GC/MS conditions
Clevenger-type apparatus was used for obtaining essential oil of V. pinetorum. The essential oil was diluted for the GC process by dichloromethane (1:3, v/v). GC/MS analyses were performed on Thermo Electron Trace 2000 GC model gas chromatography and Thermo Electron DSQ quadrupole mass spectrometry. A nonpolar Phenomenex DB5 fused silica column (30 m´ 0.32 mm, 0.25 μM film thickness) was used with helium at 1mL/min (20 psi) as a carrier gas. The GC oven temperature was kept at 60 ° C for 10 min and programmed to 280 ° C for 10 min. The split ratio was adjusted to 1:50, the injection volume was 0.1 μL and EI/MS was recorded at 70eV ionization energy. Mass range was m/z35-500 amu. Identification of the compounds was based on the comparison of their retention times and mass spectra with those obtained from authentic samples and/or the NIST and Wiley spectra as well as the literature data.
Preparation of the extracts
Whole parts of V. pinetorum (100 g) were dried under shadow and powdered, and then they were sequentially macerated 3 times with petroleum ether, acetone, methanol and water (250 mL) for 24 h at room temperature, respectively. After filtration, the solvents were evaporated to obtain crude extracts. The yield of the extracts are petroleum ether extract 0.60%, acetone extract 1.20%, methanol extract 5.00% and water extract 2.30% (w/w).
Determination of total phenolic and flavonoid contents of the extracts
The amounts of phenolic and flavonoid contents in the crude extracts were expressed as pyrocatechol and quercetin equivalents, and they were calculated according to the following equations (
20,
21):
Absorbance = 0.0125 pyrocatechol (μg) + 0.0347 (R2 = 0.9928)
Absorbance = 0.0301 quercetin (μg) + 0.0553 (R2 = 0.9984)
Antioxidant activity of the extracts
β-Carotene-linoleic acid test system (
22), DPPH free radical scavenging activity (
23), ABTS cation radical decolorisation (
24) and cupric reducing antioxidant capacity (CUPRAC) (
25) methods were carried out to determine the antioxidant activity.
Anticholinesterase activity of the extracts
A spectrophotometric method developed by Ellman et al. was established to indicate the acetyl- and butyryl-cholinesterase inhibitory activities (
26).
Determination of antimicrobial activity and Minimum Inhibitory concentration (MIC)
Five different microorganisms including gram positive bacteria (
Streptococcus pyogenes ATCC19615 and
Staphylococcus aureus ATCC 25923), gram negative bacteria (
Pseudomonas aeruginosa ATCC 27853,
Escherichia coli ATCC 25922) and yeast (
Candida albicans ATCC10231) which were purchased from Refik Saydam Sanitation Center (Turkey) were used for detecting the antimicrobial activity of the samples. The disc diffusion method was employed for this purpose (
27,
28). The minimum inhibitory concentration determined by the broth macrodilution method according to NCCLS (
29). Ampicillin and fluconazole were used as positive controls for bacteria and yeast, respectively.
DNA damage protective activity of the extracts
Measurement of the DNA damage protective activity of the methanol extract was checked on pBluescript M13(+) plasmid DNA. Plasmid DNA was oxidized with OH radicals which generated from UV photholysis of H
2O
2 in the presence of theextract and checked on 1% agarose according to Kızıl
et al. (
30). Percent inhibition of the DNA cleavage protection was calculated using the method described by Fukuhara
et al. (
31).
Statistical analysis
The results of the antioxidant, anticholinesterase and antimicrobial activity assays were mean ± SD of three parallel measurements. The statistical significance was estimated using a Student’s t-test, p values <0.05 were regarded as significant.
UHPLC ESI-MS/MS chromatograms of A: 250 ppb standard mix, B: methanol extract of V. pinetorum C: acetone extract of V. pinetorum
Inhibition (%) of lipid peroxidation of the extracts, BHT and α-TOC by β-carotene bleaching method. Values are means ±S.D. of three parallel measurements
Free radical scavenging activity of the extracts, BHT and α-TOC. Values are means ±S.D. of three parallel measurements
ABTS cation radical scavenging activity of the extracts, BHT and α-TOC. Values are means ±S.D. of three parallel measurements
Cupric reducing antioxidant capacity of the extracts, BHT and α-TOC. Values are means ±S.D. of three parallel measurements
The quantified band intensity for the scDNA (Form I), ocDNA (Form II) with Quantity One 4.5.2. version software (A). Electrophoretic pattern of pBluescript M13+ DNA after UV-photolysis of H2O2 in the presence or absence of V. pinetorum methanol extract. Reaction vials contained 200 ng of supercoiled DNA (31.53 nM) in distilled water, pH 7). Electrophoresis was performed using 1% agarose at 40V for 3 h in the presence of ethidium bromide (10 mg/mL) (B). Electrophoresis running buffer: TAE (40 mM Tris acetate, 1 mM EDTA, pH 8.2). Gel was scanned on Gel documentation system (Gel-Doc-XR, BioRad, Hercules, CA, USA). Bands on the gels were quantified using discovery series Quantity One programme (version 4.5.2. BioRad Co
| No | Analyte | Parent ion (m/z)a | MS2(CE)b | Ionization Mode | RTc | R2,d | RSD%e | Linearity Range (mg/L) | LOD/LOQ (µg/L)f | Recovery (%) |
|---|
| 1 | Quinic acid | 190,95 | 85 (22),93 (22) | Neg | 3.32 | 0.9927 | 0.0388 | 250-10000 | 22.3 / 74.5 | 103.3 |
| 2 | Malic acid | 133,05 | 115 (14),71 (17) | Neg | 3.54 | 0.9975 | 0.1214 | 250-10000 | 19.2 / 64.1 | 101.4 |
| 3 | tr-Aconitic acid | 172,85 | 85 (12),129 (9) | Neg | 4.13 | 0.9933 | 0.3908 | 250-10000 | 15.6 / 51.9 | 102.8 |
| 4 | Gallic acid | 169,05 | 125 (14),79 (25) | Neg | 4.29 | 0.9901 | 0.4734 | 25-1000 | 4.8 / 15.9 | 102.3 |
| 5 | Chlorogenic acid | 353 | 191 (17) | Neg | 5.43 | 0.9932 | 0.1882 | 250-10000 | 7.3 / 24.3 | 99.7 |
| 6 | Protocatechuic acid | 152,95 | 109 (16),108 (26) | Neg | 5.63 | 0.9991 | 0.5958 | 100-4000 | 25.8 / 85.9 | 100.2 |
| 7 | Tannic acid | 182,95 | 124 (22),78 (34) | Neg | 6.46 | 0.9955 | 0.9075 | 100-4000 | 10.2 / 34.2 | 97.8 |
| 8 | tr- caffeic acid | 178,95 | 135 (15),134 (24),89 (31) | Neg | 7.37 | 0.9942 | 1.0080 | 25-1000 | 4.4 / 14.7 | 98.6 |
| 9 | Vanillin | 151,05 | 136 (17),92 (21) | Neg | 8.77 | 0.9995 | 0.4094 | 250-10000 | 10.1 / 33.7 | 99.2 |
| 10 | p-Coumaric acid | 162,95 | 119 (15),93 (31) | Neg | 9.53 | 0.9909 | 1.1358 | 100-4000 | 15.2 / 50.8 | 98.4 |
| 11 | Rosmarinic acid | 358,9 | 161 (17),133 (42) | Neg | 9.57 | 0.9992 | 0.5220 | 250-10000 | 10.4 / 34.8 | 101.7 |
| 12 | Rutin | 609,1 | 300 (37), 271 (51), 301 (38) | Neg | 10.18 | 0.9971 | 0.8146 | 250-10000 | 17.0 / 56.6 | 102.2 |
| 13 | Hesperidin | 611,1 | 303 (24),465 (12) | Poz | 9.69 | 0.9973 | 0.1363 | 250-10000 | 21.6 / 71.9 | 100.2 |
| 14 | Hyperoside | 463,1 | 300 (27),301 (26) | Neg | 10.43 | 0.9549 | 0.2135 | 100-4000 | 12.4 / 41.4 | 98.5 |
| 15 | 4-OH Benzoic acid | 136,95 | 93 (17),65 (27) | Neg | 11.72 | 0.9925 | 1.4013 | 25-1000 | 3.0 / 10.0 | 106.2 |
| 16 | Salicylic acid | 136,95 | 93 (16),65 (31),75 (30) | Neg | 11.72 | 0.9904 | 0.6619 | 25-1000 | 4 / 13.3 | 106.2 |
| 17 | Myricetin | 317 | 179 (19),151 (23),137 (26) | Neg | 11.94 | 0.9991 | 2.8247 | 100-4000 | 9.9 / 32.9 | 106.0 |
| 18 | Fisetin | 284,95 | 135 (22),121 (27) | Neg | 12.61 | 0.9988 | 2.4262 | 100-4000 | 10.7 / 35.6 | 96.9 |
| 19 | Coumarin | 146,95 | 103 (17),91 (26),77 (27) | Poz | 12.52 | 0.9924 | 0.4203 | 100-4000 | 9.1 / 30.4 | 104.4 |
| 20 | Quercetin | 300,9 | 179 (19),151 (21),121 (28) | Neg | 14.48 | 0.9995 | 4.3149 | 25-1000 | 2.0 / 6.8 | 98.9 |
| 21 | Naringenin | 270,95 | 151 (18),119 (24),107 (26) | Neg | 14.66 | 0.9956 | 2.0200 | 25-1000 | 2.6 / 8.8 | 97.0 |
| 22 | Hesperetin | 300,95 | 164 (25),136 (33),108 (42) | Neg | 15.29 | 0.9961 | 1.0164 | 25-1000 | 3.3/ 11.0 | 102.4 |
| 23 | Luteolin | 284,95 | 217 (25),199 (28),175 (29),151 (25) | Neg | 15.43 | 0.9992 | 3.9487 | 25-1000 | 5.8 / 19.4 | 105.4 |
| 24 | Kaempferol | 284,95 | 217 (29),133 (32),151 (23) | Neg | 15.43 | 0.9917 | 0.5885 | 25-1000 | 2.0 / 6.6 | 99.1 |
| 25 | Apigenin | 268,95 | 151 (25),117 (35) | Neg | 17.31 | 0.9954 | 0.6782 | 25-1000 | 0.1 / 0.3 | 98.9 |
| 26 | Rhamnetin | 314,95 | 165 (23),121 (28),300 (22) | Neg | 18.94 | 0.9994 | 2.5678 | 25-1000 | 0.2 / 0.7 | 100.8 |
| 27 | Chrysin | 253 | 143 (29),119 (32),107 (26) | Neg | 21.18 | 0.9965 | 1.5530 | 25-1000 | 0.05 / 0.17 | 102.2 |
Parent ion (m/z): Molecular ions of the standard compounds (mass to charge ratio)
MS2(CE): MRM fragments for the related molecular ions (CE refers to related collision energies of the fragment ions)
RT: Retention time
R2: coefficient of determination
R2: coefficient of determination
LOD/LOQ (µg/L): Limit of deteection/Limit of quantification
U (%): Percent relative uncertainty at 95% confidence level (k=2).
Values in µg/g (w/w) of plant extract
N.D: not detected
| Rt (min)a | Constituentsb | % Composition |
|---|
| 14.39 | 10-Undecenoic acid | 0.4 |
| 18.60 | Myristic acid | 0.6 |
| 25.27 | Palmitic acid | 27.1 |
| 30.64 | Linoleic acid | 17.1 |
| 30.77 | Oleic acid | 11.8 |
| 30.86 | Linolenic acid | 15.1 |
| 31.54 | Stearic acid | 22.1 |
| 37.38 | Arachidic acid | 1.5 |
| 39.36 | Docosane | 4.1 |
| Total | 99.8 |
Retention time (as minutes)
A nonpolar Phenomenex DB-5 fused silica colum
| Rt (min)a | Constituentsb | % Composition | RIc |
|---|
| 10.87 | Isononane | 2.6 | 865 |
| 15.20 | β-pinene | 2.3 | 979 |
| 17.15 | Cineole | 16.9 | 1031 |
| 24.06 | 1,3-Di-tert butyl benzene | 3.2 | 1249 |
| 25.80 | Dihydro carvyl acetate | 3.5 | 1344 |
| 30.30 | τ-Muurolene | 3.4 | 1480 |
| 30.48 | Valencene | 2.7 | 1484 |
| 30.87 | α-Selinene | 16.4 | 1498 |
| 35.52 | 2-Methyl heptadecane | 2.8 | 1746 |
| 36.45 | Octadecane | 2.9 | 1800 |
| 36.74 | 2-Methyl-1-hexadecanol | 2.4 | 1890 |
| 36.93 | 1-Nonadecanol | 2.8 | 2156 |
| 40.00 | Heneicosane | 3.1 | 2109 |
| 40.13 | 2,5-Di-tert octyl-p-benzoquinone | 7.8 | 2259 |
| 40.59 | Arachidic acid | 3.5 | 2366 |
| 40.66 | Hexadecanoic acid | 2.4 | 1986 |
| 40.84 | Tetracosane | 2.4 | 2407 |
| 41.13 | 3-Ethyl-5-(2-ethylbutyl)octadecane | 2.8 | 2413 |
| 43.30 | Heptacosane | 3.1 | 2700 |
| 43.84 | Choleic acid | 2.9 | 2896 |
| 44.41 | Ethyl iso-allocholate | 2.3 | 3094 |
| 45.11 | 17-pentatriacontene | 2.6 | 3508 |
| 46.50 | Hexatriacontane | 2.3 | 3600 |
| 47.12 | Tetratetracontane | 2.4 | 4400 |
| Total | 99.5 | |
Retention time (as minutes).
A nonpolar Phenomenex DB-5 fused silica column
RI Retention indices (DB-5 column)
| Extracts | Phenolic content(μg PEs/mg extract)z | Flavonoid content(μgQEs/mg extract)t | Inhibition %against AChE | Inhibition %against BChE |
|---|
| VPP | 139.20 ± 2.83 | 92.09 ± 1.38 | NA | 44.02 ± 0.98 |
| VPA | 577.20 ± 2.63 | 111.03 ± 1.21 | NA | 15.64 ± 0.56 |
| VPM | 293.11 ± 1.31 | 27.97 ± 0.33 | NA | 25.05±0.19 |
| VPW | 339.42 ± 1.11 | 74.15 ± 0.23 | NA | 11.14±0.72 |
| Galanthaminey | - | - | 75.11 ± 0.69 | 82.49 ± 0.32 |
Values expressed are means ± S.D. of three parallel measurements, different letters in the same column indicate a significant difference (p< 0.05),
Standard drug, NA: Not active,
PEs, pyrocatechol equivalents (y = 0.0125 x + 0.0347 R2 = 0.9928),
QEs, quercetin equivalents (y = 0.0301 x – 0.0553 R2 = 0.9984).
Microorganisms
|
|---|
| Gram positive
| Gram negative
| Yeast
|
|---|
| S. aureus | S.pyogenes | E.coli | P. aeruginosa | C. albicans |
|---|
| Acetone extract | aDD | 8±0.6 | 10±0.2 | 10±0.3 | - | 16±0.2 |
| MIC | 85±0.2 | >1000 | >1000 | - | 25±0.3 |
| Methanol extract | aDD | 8±0.3 | 8±0.5 | 10±0.2 | 10±0.3 | - |
| MIC | 40±0.5 | >1000 | >1000 | >1000 | - |
| Water extract | aDD | 10±0.3 | 10±0.3 | NZ | 10±0.2 | - |
| MIC | 30±0.2 | >1000 | - | >1000 | - |
| Positive controls | bDD | 35±0.2 | 19±0.2 | 20±0.1 | - | 30±0.3 |
| MIC | 1.95±0.3 | 7.815±0.1 | 7.815±0.4 | - | 3.125±0.2 |
DD: Inhibition zone in diameter (mm) around the discs (6 mm) impregnated with 30 mg mL-1 of plant extracts.
DD: Inhibition zone in diameter (mm) of positive controls that are ampicillin for bacteria and fluconazole for yeast. Minimum inhibitory concentration (MIC) values are given as μg mL-1