In this study, 20 A. fumigatus and 20 A. flavus isolates were evaluated for their catalase activities. That in each group, half of the isolates were obtained from the clinical specimen and the rest from the environment. The clinical species were isolated from clinical samples (tissue, bronchoalveolar lavage, and wound) of immunocompromised patients who were admitted in university hospitals from 2017 to 2019, with clinical signs and symptoms of the fungal infections. Simultaneously, soils from different regions of public parks were collected to culture Aspergillus isolates. Soil and clinical samples of patients were cultured on Sabouraud dextrose agar medium (Merck, Germany) and incubated at room temperature for 7 - 10 days. The isolates were identified primarily by macroscopic and microscopic examinations with a light microscope and lactophenol cotton blue staining.
The RFLP-PCR method was used for the molecular identification of isolates (
11). Hyphae grown on each culture were used for DNA extraction. For lysis the cells, a small number of hyphae with 500 µL lithium acetate (Sigma, USA) and SDS (Sinagen, Iran) were put into a micro-tube and sonicated (GMBH, Germany) three times (20 seconds each). The mixture was centrifuged at 12000 g for 10 minutes. For protein precipitation, the supernatant was transferred to a new tube mixed with an equal volume of phenol/chloroform and centrifuged at 12000 g for 5 minutes. The supernatant was mixed with absolute ethanol (Merck, Germany) and 3 M sodium acetate (Merck, Germany) and stored at 80°C for 20 minutes. The tube was centrifuged at 12000 g for 10 minutes. The pellet was cleaned by ethanol alcohol (70%) and dissolved in the distilled water.
For PCR amplification a pair of primers ITS1 and ITS4 (Thermo Scientific, USA) forward: 5’-TCC GTA GGT GAA CCT GCG G -3’and reverse: 5’-TCC TCC GCT TAT TGA TAT GC-3’ with 570 bp length were used (
11). To identify the DNA size of the PCR product, it was electrophoresed on 1% agarose gel (Bio-Red, USA). The Endonuclease digestion of PCR products was performed by a restricted MwoI enzyme (Thermo Scientific, USA). Ten µL of PCR products were mixed with 2 µL of enzyme-specific buffer (Tango Buffer, Sinagen, Iran), 2 µL of MwoI enzyme, and 18 µL of distilled water. The mixture was stored at 37°C for 16 hours and electrophoresed on an agarose gel, visualized, and photographed using a transilluminator (
11). After digestion, the DNA of
A. flavus and
A. fumigatus was broken to 9, 20, 40, 65, 98, 325, and 29, 108, 125, 207 bp, respectively.
Aspergillus species were grown in a liquid medium containing 1% yeast extract (Merck Germany) in a shaker incubator for 3 days (
7). Young mycelia were collected by the centrifugation of culture broth media. Mycelia were rinsed twice with 0.05 M Tris-HCl buffer (pH = 7.5). The cleaned mycelium was put on a small plate and dried with 200 µL acetone. One gram of dried mycelia was mixed with 500 µL of 10 M Tris-HCl buffer (pH = 7.8) and sonicated for 10 minutes on ice (Branson sonifier model W-185) at a power setting of 90 W. The tube was centrifuged at 100g for 15 minutes, and the supernatant was used for the catalase activity test. For evaluating catalase activity in conidia,
Aspergillus species were grown on 2% malt extract agar medium (Merck, Germany) for one week at 25°C. Mixed distilled water and tween 80 was added to the plates, and conidia was collected. The concentrations of 5 × 10
5 to 0.5 × 10
5 conidia/ml in Tris-HCl (10 mM, pH = 7.8) were prepared by hemacytometer. Conidial catalase was extracted by sonication of conidia for 20 minutes on an ice bath (
12). Cell debris was removed by centrifugation at 100 g for 15 minutes. The clear supernatant extract was evaluated for catalase activity.
Catalase activities were evaluated using the Amplex® Red Catalase Assay Kit A22180 (Invitrogen, UK) following instructions published by the manufacturer. The catalase standard curve was prepared by diluting an appropriate amount of the catalase solution in the kit. Reaction buffer without catalase was used as a negative control. The kit can evaluate catalase activity higher than 50 mU/mL of purified catalase by fluorometry as well as spectrometry. In this study, catalase activity was detected spectrophotometrically at 560 nm twice. The kit producer defined one catalase activity as the amount of enzyme decomposing 1.0 µmol of hydrogen peroxide.
Data were analyzed using SPSS version 18. A P value of < 005 was considered statistically significant. Normal distribution of data was assessed using the Shapiro Wilk and Kolmogorov-Smirnov tests, and the results showed that data were not distributed normally. Therefore, the Mann-Whitney test and Wilcoxon Signed Ranks test were used to analyze the data.